Gossypium raimondii: 105773097
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Entry
105773097 CDS
T04129
Name
(RefSeq) uncharacterized protein LOC105773097 isoform X2
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
gra
Gossypium raimondii
Pathway
gra03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
gra00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
105773097
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gra03021
]
105773097
03019 Messenger RNA biogenesis [BR:
gra03019
]
105773097
Transcription machinery [BR:
gra03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
105773097
Messenger RNA biogenesis [BR:
gra03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
105773097
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NUFIP1
Motif
Other DBs
NCBI-GeneID:
105773097
NCBI-ProteinID:
XP_012450207
UniProt:
A0A0D2RB95
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Position
6:complement(56109968..56115830)
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AA seq
580 aa
AA seq
DB search
MRPPFNSFSHRPQQNGFQSNSAVANQCNNNMNMLMMQPQMGIFNPQLPTPLSNNINNINK
NSSVMPLLNNVGFMNGANQQFPTQNNSTGFPQIGPVFPNMNNLAMFPQLPAQFNNSLHNP
NQPNWLNLPQQNNMGLTNGQQQRQQLQQQQLFLQNQLQNVSQLLNSQLPDLSQFVSGGQA
IVPNPHFGIMRPNQMQQQANQSQQNLADVNASNLSSVPASLVPGDPSFGRPMGGPGKNSQ
NMNNFPGRNAKRDSKWGSQKSKFQQPRFHQADNGKRAFASSNGHKKKGPDNERAAKFPHS
NSANPAKEKRRSLALTYTEEEIRKWREERKKFYPTKANIKKKLSGKEADSEVEKSRSEQL
KEILAKQAELGVEVAEIPPQYLLGLEKRVNGREENRRPSTKRGRFGMRNDKRGRPDKRDC
NSKKPRPTTEESFDGSSFSKRSPTLLQKLLRADIRKDKSWLLQVLRFMVMNSFFKDWPEK
PLKFPVVVVKDGVSEGEIVQEKTLLDAEDNIEAGNKTMTQSIVDAAGDDDIENNNAGEEG
EEDDDDNKKHDTQVDPVNLYVREKVAELVRNGEGEGEIID
NT seq
1743 nt
NT seq
+upstream
nt +downstream
nt
atgagacctccgttcaattcgttttcccaccgaccccagcagaatggttttcaatcaaat
tctgcggtggcaaaccagtgcaataacaacatgaacatgcttatgatgcaacctcaaatg
ggtatttttaatcctcagctgccaactccgttgagtaataatattaataatattaataag
aattctagtgttatgccattgctaaataatgttggattcatgaatggagctaaccagcag
tttcctacacaaaataacagtacggggtttcctcaaattggtccagttttcccaaacatg
aacaatcttgcaatgttcccacaacttcctgctcaattcaataactctttgcataatcca
aatcaaccaaattggttgaatttgcctcaacaaaataatatgggtttgacaaatgggcag
cagcagcggcaacaactacagcaacaacagctttttttacagaaccaattgcagaatgtg
agccaacttttgaattctcaactcccagatctctcacagtttgtttctggtggccaagcc
attgttccgaatccgcatttcgggattatgcggccaaaccagatgcagcagcaagccaat
cagagtcagcaaaatttagcggatgttaatgcatcgaatttgtcttctgtacctgcttca
ctagtaccaggagacccttctttcggaaggccaatgggtggtcctggtaaaaacagtcag
aacatgaacaactttcctggaagaaatgctaaaagggattcaaaatggggatctcagaag
tctaagttccagcagccccggttccatcaagcggataatggaaagagagcgtttgcatct
tctaatggacataagaaaaaagggcctgataatgagagggcagctaaatttcctcattct
aattctgcaaacccagctaaagaaaagagaaggtcgcttgctttgacctatacggaggaa
gagataagaaagtggcgtgaagaacgtaagaagttctatccaacaaaagccaacataaag
aagaaactgagtggaaaagaggctgactccgaggttgaaaaatcacgtagcgagcaactc
aaggagattttggcaaagcaagctgaattaggagtcgaagttgcagaaattccgccacag
tatcttctaggtttggagaaaagggtgaatggaagggaagaaaaccgtaggccatcaacc
aagagggggagatttggaatgaggaatgataaaagagggagaccagataagagagactgt
aattccaagaagccaagaccaacaactgaggaatcatttgatggcagttctttcagcaag
aggagtccgacccttttgcaaaaacttcttagagctgatataaggaaagataaaagctgg
ttgttgcaggttctccgcttcatggttatgaattctttctttaaggattggcctgagaag
cccttgaaatttcctgtagtagttgttaaagatggtgtatccgagggtgagatcgttcaa
gagaaaaccttgcttgatgctgaagataatattgaagctggcaacaagacaatgacccaa
agtatcgttgatgctgctggtgatgacgatatcgaaaacaacaatgctggtgaagaagga
gaagaagatgatgacgacaacaaaaaacatgacactcaagttgacccagtgaatttgtat
gttagggagaaagtagcagaacttgtgaggaatggtgaaggagagggagaaatcattgac
tag
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