KEGG   Gossypium raimondii: 105773117
Entry
105773117         CDS       T04129                                 
Name
(RefSeq) THO complex subunit 6
  KO
K13175  THO complex subunit 6
Organism
gra  Gossypium raimondii
Pathway
gra03013  Nucleocytoplasmic transport
gra03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:gra00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    105773117
  09122 Translation
   03013 Nucleocytoplasmic transport
    105773117
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:gra03019]
    105773117
   03041 Spliceosome [BR:gra03041]
    105773117
Messenger RNA biogenesis [BR:gra03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     105773117
Spliceosome [BR:gra03041]
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    105773117
SSDB
Motif
Pfam: Beta-prop_WDR5 Beta-prop_IFT122_1st WD40 Beta-prop_WDR3_1st Beta-prop_THOC3 WD40_Prp19 WD40_WDHD1_1st EIF3I WDR55 Beta-prop_WDR3_2nd Beta-prop_WDR41 Beta-prop_EML_2 Beta-prop_CAF1B_HIR1 WD40_CDC20-Fz Beta-prop_TEP1_2nd Beta-prop_WDR36-Utp21_2nd Beta-prop_EML WD40_Gbeta Beta-prop_WDR75_1st Beta-prop_WDR36-Utp21_1st WDR90_beta-prop_4th WD40_MABP1-WDR62_2nd Beta-prop_EIPR1 Beta-prop_VPS8 Beta-prop_RIG_2nd DSE1_N NBCH_WD40 Beta-prop_TEP1_C Beta-prop_Aladin Beta-prop_ACSF4 Beta-prop_Nup120_160 Beta-prop_NOL10_N
Other DBs
NCBI-GeneID: 105773117
NCBI-ProteinID: XP_012450244
UniProt: A0A0D2R4C2
LinkDB
Position
6:complement(12578737..12582484)
AA seq 371 aa
MCGDATNWDEEAYRESILREREIQTRTVFRTVWAPSFNPKPECVVVASSDGSIASYSISS
CVSKHPIGFCSARAQRLLPAEPEGFLEGHDGPAYDVKFYGNGEDSLLLSCGDDGKIKGWR
WKEFTESEVPITFQGNHMKPVLDLINPQDKGPWGALSPIPENNAIAVDPQGGSIFSAAGD
SCAYCWDVEKSEIKMVFKGHTDYLHCILSRASSSQIITGSEDGTARIWDCKSGKCIKVID
PLKDKKLKGRISCVSCIALDASESWLACGSGRSLSVWNLTASECISSISNGASIQDVVFD
NNQILAVGADPVLNRFDMNGMILSQIQCAPQSAFSVSLHPSGVTAIGGYGGLVDVISQFG
SHLCTFRSHCV
NT seq 1116 nt   +upstreamnt  +downstreamnt
atgtgcggggacgctacaaactgggacgaagaagcatatagggagagtatattaagggaa
agagagatccaaactcgaacagtattccgaaccgtttgggctccttcctttaaccctaaa
ccggaatgcgtcgtggtcgcctccagcgacggttccatcgcttcttactccatttcttcc
tgtgtttccaaacacccgattggtttctgcagtgctagggctcaacggttgttaccggct
gagccggagggtttccttgaagggcatgatggacctgcgtatgacgtgaaattctacggc
aatggcgaagattctttgttgttaagttgtggtgacgatggtaaaattaaaggatggcgg
tggaaggaatttactgaatctgaggtgcctattacctttcaaggaaaccatatgaagcca
gtgcttgatttgatcaatccacaagataaaggtccatggggtgctctctctccaattccc
gagaataatgccattgctgttgatcctcaggggggatccatcttttctgctgctggtgat
tcttgtgcatattgctgggatgtggagaagagtgaaatcaaaatggtatttaagggacac
acagactatttgcattgtattctatcacgtgcctcttccagtcagattataactggatca
gaggatgggactgcacgaatatgggattgcaaaagtggtaagtgcattaaagtaattgac
ccactaaaggacaagaagttgaaggggcgtatctcttgtgttagttgcattgctctagat
gcaagtgagagctggttggcatgtggcagtggccgaagtttgtcagtttggaatctcact
gcttctgaatgcatttcaagtatttccaacggtgcatccatacaggacgtggtgtttgat
aacaatcaaatattagctgttggtgcagaccctgtgttgaaccgtttcgatatgaatgga
atgatactttcccagatacaatgtgctcctcaatcagcgttttcggtctctttgcacccg
tctggtgtcactgcaatcgggggttacgggggtcttgtagatgtgatttcacagtttgga
agtcatttgtgcactttccgtagccattgtgtttga

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