Gossypium raimondii: 105773176
Help
Entry
105773176 CDS
T04129
Name
(RefSeq) polyadenylation and cleavage factor homolog 4 isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
gra
Gossypium raimondii
Pathway
gra03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
gra00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
105773176
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gra03021
]
105773176
03019 Messenger RNA biogenesis [BR:
gra03019
]
105773176
Transcription machinery [BR:
gra03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
105773176
Messenger RNA biogenesis [BR:
gra03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
105773176
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf_PCFS4
CID
Pcf11_C
zf_UBZ
Motif
Other DBs
NCBI-GeneID:
105773176
NCBI-ProteinID:
XP_012450328
UniProt:
A0A0D2UGJ7
LinkDB
All DBs
Position
6:complement(50650910..50656469)
Genome browser
AA seq
1004 aa
AA seq
DB search
MAISNELAQKQLPSISERFKALLKQREDELRVSGGVADDDGATPTTEEIVQLYEVVLSEL
TFNSKPIITDLTIIAGEQREHGEGIADAICARIIEVPVEQKLPSLYLLDSIVKNIGREYV
RYFSSRLPEVFCEAYRQVNPNLHPAMRHLFGTWSTVFPPSVLRKIEMQLQFSQTGNQQSS
GVTSLQSSESPRPTHGIHVNPKYLRQFEQQSGADSNTQHVRGMSAGQKLYGQKHTITYDE
FDSDHTEVPSSHVGVQRLSSTGNVGCTSLAIGANKSQLSSASRVSRPFSPSRIGSDRLLS
SEVDDLPSDDSPRRFAEVASPSRPPVFDFGRGRGTIRDEETREWPRKHFYGDYRNCSEGS
LNSYKLSNGNERQTLRALIDAYGNDRGQGMSNSKPVQVERLDVNGMGNKVTPRSWQNTEE
EEFDWEDMSPTLADRRSNEFSVSSVATFGSIGARPAGLESNRSSRSNQTQLALDESSTIP
EDAVPSLSSGHGLNQIQRPRYPQDAWSNSYPFSQSSHQLHAKGRGRDFWIPFSASGISSL
GGEKNVPLIEKLPEGGSQFVRPPALVPRSGSSSLDTVTVVTQPAMLPLTAGAWPPVNVPK
SQPPNAHTNYSLQQHGRSHFDSLNPINAAMNQGQNKHPYMPEQFDNFESKEQSLKTVPQL
PGQRPALQQRNSLHGSLQPHFPPNDARDSFLSSATGPLPPRLLAPSMNHGYSPQMHGAGI
SMVPSNPIPVAQPPLSIPNMPTGSLHLQGGAMPPLPPGPRPTSQMMPAAQNAGPLLPNQP
QGGPFTGLISSLMAQGLISLTKPTPIQDSVGLEFDADLLKVRHESAISALYADLPRQCTT
CGLRFKFQEEHSTHMDWHVTRNRMSKNRKQKPSRKWFVSASMWLSGAEALGTDAVPGFLP
TEDIVEKKDDEELAVPADEDQNLCALCGEPFDDFYSDETEEWMYRGAVYMNAPNGSVEGI
DRSQLGPIVHAKCRSESSVVPPEDFVRYDGGNPEDSSQRKRLRS
NT seq
3015 nt
NT seq
+upstream
nt +downstream
nt
atggccatatccaatgaactagcccaaaagcaactaccgtcgatatcggaacggttcaag
gctttattgaagcaacgggaagatgagctcagggtttccggcggtgttgctgatgatgat
ggggcaacgccgactacggaggagattgttcagctttacgaggttgtattatcggaacta
actttcaattcgaagcccataattactgatctcacgatcattgccggtgaacagcgagag
cacggcgaaggcattgccgatgctatttgcgcacgaattattgaggttccagtagagcaa
aaacttccttcgttatatctattagatagcattgtaaaaaatattggccgagaatatgtt
aggtatttctcttcccgtttgccagaggtattttgtgaggcatacaggcaagttaatcct
aacttgcatcctgcaatgcgacatctatttggcacatggtcaacagtttttccgccttcc
gtgctacgtaaaatcgagatgcaactgcagttttctcaaacggggaaccaacaatcttct
ggagtaacttccttgcagtcttctgaatcacctcgtccaacacatggcatacatgttaat
cctaagtacttgcggcagtttgaacaacagtcaggtgcagatagtaatacgcagcatgta
agaggcatgtctgctggtcaaaaattgtatggtcaaaaacatacaattacatatgatgaa
tttgattctgatcacactgaggttccatcctcacacgttggtgtgcaaagattgagctca
actggaaatgttggctgtacttctcttgcaattggggctaataaatcacaactttcttca
gcttccagagtttcaagacccttctcaccatcaaggattggatctgatagacttttatca
tcagaagttgatgatcttccatcagatgattctcctagaaggtttgcggaggtagcctct
ccatctcgtcctcctgtctttgattttggacgtggaagaggaaccatcagagatgaggaa
acaagggagtggccaaggaagcacttttatggcgattaccgtaattgttctgaaggttct
ttaaattcatacaagcttagtaatggaaatgagcgccaaacactcagggctttaatagat
gcatatggtaatgatagaggacaaggaatgtctaacagcaagcctgtacaagttgagcgg
ctggatgtaaatggcatgggcaataaggtgactccaagatcatggcagaatactgaagag
gaagagtttgattgggaagatatgagcccgacattagcagaccgaaggagcaatgaattt
tcagtgtcatctgttgccacttttggaagcattggagcaaggcctgctggattagaatct
aataggagcagtcgctctaatcaaactcagctggcccttgatgaatcttcaacaattcct
gaagatgcagttccttcactgagttctggtcatggattaaatcagattcaacgtccgcgt
tatcctcaggatgcttggagtaactcatatcctttttcccagtcatcacaccagcttcat
gccaaaggaagaggaagggatttctggatacccttttcagctagtggtatatcctcgtta
ggtggtgagaaaaatgtccctcttattgagaaattgcctgagggtggttcacaatttgtt
aggcctccagcccttgttccaagatctggttcttctagccttgacactgttactgttgta
actcaaccagccatgttacctttgactgctggggcatggcctccagtaaatgttcctaaa
tctcagccgccaaatgcgcacactaactattcactgcagcagcatggtaggagtcacttt
gattctttgaatcctatcaatgctgccatgaatcagggtcaaaacaaacatccatatatg
cctgaacaatttgataattttgaaagcaaggagcaaagtttgaaaactgtgccacaattg
cctggacaacgccctgcattgcaacagcgaaattcgttgcatggatctttgcagccacac
tttccccctaatgacgctcgagatagttttctttcatccgcaacaggacctttaccacca
cgcttattggcaccatccatgaatcatggctactctccccaaatgcatggtgccggcatc
agtatggtcccatctaatccaatacctgttgcacaacctcctttatcaatcccaaatatg
ccaactggctcattgcatttgcaggggggagccatgccacctctcccccctggtcctcgt
ccgacatctcaaatgatgcctgccgcccaaaatgctggtccattgctccctaaccaaccg
cagggcggtccattcactggtttgattagttccctcatggctcaaggtttgatttcattg
acaaaaccaactccaatacaggattctgtgggacttgagtttgatgcagacctcctcaag
gtgcgacatgagtctgctataagtgctttatatgctgatcttccaaggcagtgcacaaca
tgtggccttcggttcaagttccaagaggagcatagtactcatatggattggcatgtgaca
agaaaccggatgtctaagaaccgtaagcagaaaccttctcggaagtggtttgtaagtgct
agtatgtggcttagtggtgcggaagctctgggaactgatgcagttcctgggtttttaccc
actgaggacattgtagaaaagaaggatgatgaagaattggcagttcctgctgatgaagat
cagaacttatgtgcattatgtggtgaacccttcgatgatttttatagtgatgaaacagag
gagtggatgtataggggggctgtctacatgaatgcacccaatgggtcagttgaaggcatt
gatagatcgcagttaggtcccatagtgcatgctaaatgcaggtcagagtctagtgtggtt
ccccctgaagattttgtacggtatgatgggggaaatcctgaggacagtagtcaaagaaaa
agattgcggagttaa
DBGET
integrated database retrieval system
