Gossypium raimondii: 105773222
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Entry
105773222 CDS
T04129
Name
(RefSeq) pre-mRNA-processing protein 40A isoform X1
KO
K12821
pre-mRNA-processing factor 40
Organism
gra
Gossypium raimondii
Pathway
gra03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
gra00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
105773222
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
gra03041
]
105773222
Spliceosome [BR:
gra03041
]
Complex A
U1 snRNP components
U1 related factors
105773222
Complex B
105773222
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FF
FF_PRPF40A
WW
WW_TCERG1
FF_RHG35_4th
Motif
Other DBs
NCBI-GeneID:
105773222
NCBI-ProteinID:
XP_012450388
UniProt:
A0A0D2U4X1
LinkDB
All DBs
Position
6:complement(2225670..2235998)
Genome browser
AA seq
1026 aa
AA seq
DB search
MANNSQPSSAQPHWPPAVGSMGPQSYGSPLSSQFRPVVPTQQGQHFVPAASQQFRPVGQV
PSPNIGMPAVQNQQMQFSQPMQQFPPRPNQPGLSTPSQQPIQVQYGQTNRPLTSEPPQSH
QSAPPLNSHMPGVGVPGVPPSSYGFAPSSFGLPQNNVSAPSQFHPISQVHAPVAPVAGQP
WLSTGNQNVSLATPTQHTSQQPPPSSADTNANVPSLTPQSSDWQEHTSADGRRYYYNKRT
RQSSWEKPLELMTPIERADASTVWKEFTTPEGRKYYHNKVTKESKWTIPEELKLAREQAQ
AASSQGTPSGSGVAPQAPVATAVSAAETPTTAIPVSSNTLQDSSPVSVTPVANPSPTSVS
GPTTGPVAQSAAMSATGVQLPVVSVTPVPAVPSRGSTVSAPSVGATTAVTRSSETTATQD
TMHFADGASAQDIEEAKKGMATAGKVNMTPVEEKVPDDEPLVYANKLEAKNAFKSLLESA
NVQSDWTWEQTMREIINDKRYGALKTLGERKQAFNEYLGQRKKLEAEERRMRQKKAREEF
TKMLEESKELTSSMRWSKAQSLFENDERFKAVERARDREDLFENYIVDLERKEREYAAEE
KRRNIAEYRKFLESCDFIKANSQWRKVQDRLEDDERCSRLEKIDRLLIFQDYIHDLEKEE
EEKKKMQKEQLRRAERKNRDAFRKLMEEHVADGTLTAKTYWRDYCLKVKELPQYLAVASN
TSGSTPKDLFEDVAEELDKQYHEHKTRIKEAMKTGKVTMVYSWTFEDFKAAISEDVGSSS
ISDINLKLVYDELLERAKEKEEKEAKKRQRLADDFTRLLHTYKEITASSDWEESKPLFEE
SQEYRSIAEESFRREIFEEYITHLQEKAKEKERKREEEKAKKEKDREEKDKRKEKEKERK
EKEREREREKGKDRSKKDETDSENLDISDSHGHKEEKKKEKEKDRKHRKRHAADDGSSDK
DDREESKKSRRHGSDRKKSRKHAHSPDSDSESRHRKHKRDHRDGSRRNSGYEELEDGELG
EDGEIQ
NT seq
3081 nt
NT seq
+upstream
nt +downstream
nt
atggctaacaattctcaaccctctagtgcccagccacattggcctcctgcagttggatcc
atgggtccccaaagttatggctctccgttatcttcacagtttcgaccagtggtcccaacg
cagcaagggcaacactttgttccagctgcttcccaacagtttcggcctgttgggcaggtt
ccttctccaaatattgggatgccagctgttcaaaatcagcagatgcagttttctcagcca
atgcagcagtttccaccccggccaaatcagcctggtctttctacaccttcacaacagcca
atacaggtacaatatggtcaaacaaacaggcctcttacatctgaaccacctcagtcacat
caatctgcacctcctttgaatagtcatatgcctggtgtaggagtccctggagtgccccct
tcatcatatggttttgcgccatcttctttcggcttgccacagaacaatgtcagtgcacca
tcgcagtttcaccctatatctcaagtgcatgcacctgttgccccagttgcagggcaacct
tggttgtcaactggaaatcagaatgtttcacttgctacaccaacacagcatactagccaa
caacctccaccttcttctgctgatacaaatgcaaatgttcctagccttactccgcaatct
tctgattggcaagagcatacatcagctgatggaagaagatactattacaacaaaaggaca
aggcaatctagttgggaaaagcctctggaactgatgacaccaatagagagagctgatgca
tccactgtttggaaggaatttacaactccagagggaagaaagtattaccacaacaaggtt
acaaaggagtctaagtggacaatacctgaggagttgaagttagctcgtgagcaagctcaa
gcagcaagtagccaaggtaccccatcaggttctggagtggctcctcaagctccagttgct
actgctgtctctgcagctgagacacctactacagctattcctgtgagctccaacactttg
caggattcaagcccagtttcagttacgcctgttgctaatccttcacctacttcagtatct
ggaccaacaacaggtcctgttgcacaatcagctgctatgagtgcaactggggttcaactc
cctgttgtgtctgtcacacctgtacctgcagtcccctccagaggttccactgtctctgct
ccttctgtcggtgctaccacagcagtcacaagaagctcggaaactacagcaactcaagac
actatgcattttgcagatggagcttctgctcaggacattgaggaagctaaaaaggggatg
gcaacagctggaaaagttaatatgactccggtggaagagaaggttccagatgacgagcct
ttagtatatgcaaataagctggaggcaaaaaatgctttcaaatcactccttgaatctgca
aatgtgcaatctgattggacttgggagcagacaatgagagaaataattaatgacaaaagg
tatggtgctctgaagacacttggtgaacggaagcaagcctttaatgagtatttgggtcaa
agaaagaaattagaggctgaggaaaggcgcatgagacagaagaaagctcgagaagagttt
acaaagatgttggaagagtccaaggaactaacatcatcaatgagatggagcaaagctcaa
agtttgtttgaaaatgatgaacggtttaaggctgttgaacgagccagagatcgggaagat
ctctttgaaaactatatagtggatcttgagaggaaggaaagggaatatgctgcagaggaa
aaaaggcggaatatagcagaatacaggaaatttctggaatcctgtgattttattaaggca
aacagccagtggcggaaagttcaagatcgcttagaggatgatgaaagatgctcacgtctt
gaaaaaattgaccgcttgctcatattccaggactacattcatgacttggagaaggaagaa
gaggaaaaaaagaagatgcaaaaggaacaactgagacgtgctgagcgcaaaaaccgtgat
gcatttcgtaagctaatggaagaacacgttgccgatggcactcttacggctaaaacttat
tggcgagattattgtttgaaggtgaaagaattgcctcagtatcttgctgttgcatctaac
acatcaggttcaactccaaaagatttgtttgaggatgttgctgaagaattagacaaacag
tatcatgaacacaaaacccgcataaaagaagcaatgaagacagggaaggttactatggtt
tactcatggacatttgaagacttcaaggctgctatttcagaagatgttggttcctcatcg
atatcggatattaacttaaagcttgtgtatgatgagctgctcgagagagccaaggagaag
gaggagaaagaggctaaaaaacgtcaacgtctagccgatgatttcactagactattacat
acatataaggagataaccgcttcttctgactgggaagaatcgaaaccactttttgaagaa
agccaagaatacagatcaattgcggaagaaagctttaggagagagatctttgaggaatac
attacacacttacaggagaaagctaaagaaaaggagcgtaaacgagaggaggaaaaggct
aaaaaggagaaagatagagaagagaaagataaacggaaagagaaggagaaggagagaaag
gagaaggaaagagaacgggagagggaaaaaggtaaagaccgaagtaaaaaagatgaaaca
gatagtgagaatttagatatatctgacagccacggccataaagaggagaagaaaaaggag
aaggaaaaagacaggaaacaccgtaaacgacatgctgctgatgatgggagttctgacaag
gatgatagagaggagtcaaagaagtctcgtagacatggtagcgaccgtaagaaatctaga
aagcatgctcactcacccgattctgacagtgaaagccgacatagaaaacacaagagagat
caccgtgatggctcacgccgaaacagtggttacgaggagctggaagatggcgaactcggt
gaggatggtgaaatccagtag
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integrated database retrieval system
