Gossypium raimondii: 105773245
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Entry
105773245 CDS
T04129
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH9
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
gra
Gossypium raimondii
Pathway
gra03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gra00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
105773245
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gra03019
]
105773245
03041 Spliceosome [BR:
gra03041
]
105773245
03009 Ribosome biogenesis [BR:
gra03009
]
105773245
03016 Transfer RNA biogenesis [BR:
gra03016
]
105773245
Enzymes [BR:
gra01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
105773245
Messenger RNA biogenesis [BR:
gra03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
105773245
Spliceosome [BR:
gra03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
105773245
Complex C
U4/U6.U5 tri-SnRNP related factors
105773245
Ribosome biogenesis [BR:
gra03009
]
Eukaryotic type
Pre-60S particles
Helicases
105773245
Transfer RNA biogenesis [BR:
gra03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
105773245
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
ResIII
DUF7491
ATPase_2
nSTAND3
AAA_23
Motif
Other DBs
NCBI-GeneID:
105773245
NCBI-ProteinID:
XP_012450424
UniProt:
A0A0D2R9H5
LinkDB
All DBs
Position
6:complement(49846443..49858049)
Genome browser
AA seq
991 aa
AA seq
DB search
MESLKRKSGEAISSESPPPPQKKKHHGEDVSPLAEEAFGCVHDVSYPEGYVPSASSLQFL
ADSKPAKEFPFTLDPFQSEAINCLNRGESVLVSAHTSAGKTVVALYAIAMSLRNNQRVIY
TSPIKALSNQKYREFKEEFSDVGLMTGDVTIDPNASCLVMTTEIWRSMQYKGSEIIREVA
WVVFDEVHYMRDRERGVVWEESIVMAPKNSRFVFLSATVPNAKEFADWVAKVHKQPCHIV
YTDYRPTPLQHYIFPAGGDGLFLVVDEKGKFREDSFQKALNALVPTSESDKKRNNGKSQN
GLVMGKVSEQSDIFKLVKMIIQRQYDPVIIFSFSKRECEFLAMQMAKMDLNDDDEKGNIE
TVFWSAMDMLSDDDKKLPQVSNMLPLLKRGIGVHHSGLLPILKEVIEILFQEGLIKCLFA
TETFSIGLNMPAKTVVFTNVRKFDGDKFRWISSGEYIQMSGRAGRRGIDARGICILMVDE
RMEPSTAKMMLKGNADSLNSAFHLSYNMLLNQLRCEEADPESMLRNSFYQFQADRSIPDL
EKQVKALEEERDSMIIEEEDSLRNYYSLTQQYKSLKNDIRDIVFSPKYCLPYMKSGRPIC
IQCIDDETSPSFSVEDHVTWGVLMDFHRVKTVTEDDACKRPEDASYALDILTRCNVSKEG
VGKKKIKIVPLKEPGEPLVVSIPLSQVTSLSSARLNIPKDLLPLEARENALKKLSEFISR
YATGMPLDPEEMDIQSNSYKKAVRRLEALENLFEKHEIAKSPLIEQKLKLLNRKEELTAR
IRSIKKTMRSSTALAFKDELKARKRVLRRLGYITSDDVVELKGKVACEISSADELTLTEL
MFSGVLKDVKAEEMVSLLSCFVWREKLQDAAKPRDELELLFTQLQDTARRIAKVQLECKV
QIDVESFVSSFRPDIMEAVYAWAKGSKFYEIMEITQVFEGSLIRAIRRLEEVLQQLILAA
RSIGETALETKFEEAVSKIKRDIVFAASLYL
NT seq
2976 nt
NT seq
+upstream
nt +downstream
nt
atggaatccttgaagaggaagtcaggtgaggcgatatcctctgagtctcctccgccgccg
cagaagaagaaacatcacggtgaagacgtctcaccgttggcggaggaagccttcggatgt
gtccatgatgtttcatatcctgaaggttatgttccttctgcttcctctttacaatttcta
gctgactctaaacctgccaaggagtttcctttcacgcttgacccctttcagtctgaagct
atcaactgcctcaatcgtggcgaatctgtccttgtatcggcacatacatcagcaggcaaa
actgtagtagctttatatgcaattgctatgtctttgcggaataatcagcgtgttatatat
acttcacctattaaggctctcagcaatcagaagtatagggagtttaaagaggagttttcc
gatgtcggtttgatgactggagatgttacaattgaccctaatgcttcttgtttggtgatg
accacggaaatctggcgaagtatgcagtataaagggtccgagattattcgtgaggtggcg
tgggttgtttttgatgaagtgcattacatgcgtgatcgcgagagaggtgttgtctgggaa
gagagtattgttatggcaccgaagaactctcgatttgtatttctttcagcaactgtacct
aatgcgaaggaatttgctgattgggtggccaaggttcacaaacaaccatgtcacatagtt
tacaccgattataggccaacccctcttcagcattatattttccctgctggaggtgatggt
ctgtttttggtggtagatgagaaaggaaaatttcgggaggatagctttcagaaagcttta
aatgcactagttcctacaagtgaaagtgacaagaaaagaaataatggtaaatcacaaaat
gggttagtgatgggaaaagttagtgaacaaagtgacatcttcaagttggtgaaaatgatc
attcagcgacagtacgatcctgtaataatttttagctttagcaaaagggaatgtgaattt
cttgcgatgcagatggcaaagatggatttaaatgatgatgatgagaaaggaaatatagaa
acagtcttttggagtgccatggatatgctttccgatgatgataagaagctacctcaggtg
tcaaacatgttaccgcttttgaaacgtggaataggtgtgcatcattctggtttgcttcca
attctaaaggaagtgatagagatattatttcaggaaggactgattaagtgtttgtttgcc
acagagaccttcagtattgggctaaacatgcccgctaaaactgtcgtgtttacaaatgtt
cgtaaatttgatggggacaagtttagatggatatctagtggagaatatattcaaatgagt
ggccgtgctggtcgtcgaggaattgatgcacgtggaatatgcattcttatggtggatgaa
aggatggaaccatctacagctaaaatgatgctcaagggaaatgctgatagtttgaacagt
gccttccacctaagctacaatatgctattgaatcaattgcgctgtgaagaggctgatcct
gaaagtatgcttcgtaattcattctatcagtttcaagctgatcgttcaattcctgacctt
gagaaacaagtaaaggcccttgaagaagagagggattccatgataattgaagaagaagat
agtttgaggaattattacagtctaactcagcaatacaaaagtttgaagaatgatattcgt
gatattgtgttttctccaaagtattgtttaccctatatgaaatctggcaggcctatctgt
atacaatgcattgatgatgaaacatctccatctttctctgttgaggatcatgttacctgg
ggtgttttaatggactttcatagggtgaaaactgttactgaagatgatgcctgtaaaaga
ccagaagatgcaagttatgcccttgatattcttacaagatgtaatgtgagcaaagaaggt
gttgggaagaaaaaaattaagatcgtccctttgaaagagcctggagaacctcttgttgtt
tccatccctctctctcaggttactagtttaagtagtgcacgcttgaacatacccaaagat
cttctgccattagaagctcgtgagaatgccttgaagaaactttctgaatttatttctaga
tatgctaccggaatgcccctggatcctgaagaaatggatattcaaagcaactcatataaa
aaggctgtccgtaggttggaggcattagagaacctctttgaaaagcatgaaattgcaaaa
tccccgcttattgagcaaaagcttaaacttttgaacaggaaggaagagttgacagccagg
atcagatcaattaagaaaacaatgcgttcttccacagccttggcttttaaagatgagctt
aaggccagaaaacgggttctaaggaggctaggatatattacaagtgatgatgttgttgag
ttgaagggcaaggttgcttgtgagatcagtagtgctgatgagttgactcttacagagctt
atgttcagtggtgttctgaaagatgtaaaggcagaagaaatggtgtctcttctctcttgt
tttgtttggcgggagaagctccaagatgctgcaaagcccagggatgaattagagctgctc
tttacacaactacaagatactgcacggaggattgccaaagttcagcttgagtgcaaggtt
caaattgatgtagagagctttgtaagttcatttcggcctgatattatggaagctgtatat
gcgtgggcaaaaggatccaagttctatgagattatggaaattacacaggtttttgagggc
agcttaatcagagccatcagacgactggaagaagttcttcagcagcttattttagcagcc
aggtctattggagagacagctctcgaaacaaaatttgaagaggctgtctctaagattaaa
agagacatagtgtttgcagcatctctatacttatag
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