Gossypium raimondii: 105773251
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Entry
105773251 CDS
T04129
Name
(RefSeq) SNF2 domain-containing protein CLASSY 1
KO
K10875
DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
Organism
gra
Gossypium raimondii
Pathway
gra03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
gra00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
105773251
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gra03400
]
105773251
DNA repair and recombination proteins [BR:
gra03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Rad54 family proteins
105773251
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
DEAD
SAWADEE
Motif
Other DBs
NCBI-GeneID:
105773251
NCBI-ProteinID:
XP_012450431
UniProt:
A0A0D2SVZ4
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All DBs
Position
6:53684221..53690597
Genome browser
AA seq
1268 aa
AA seq
DB search
MRKRHLYHSEHPFDEYPFEVFVQDSWQAVELIRIKNGFMTLHLIDGQYLIEKKPFSDLRV
KSRKATLPDCTCFLRPGIDICILSRPQETESLDEETPEPVWVDAKISSIERKPHDSECSC
QFYINLYDNRAPLGSEKGTLSKETEVIGINDICILQKLEKNACEDQHYRWNFSEDCSTLK
RTKIFLGKFSSDISWLLVTSVLKQIAFDVRSVQNKIVYQILDQDDDSPLKYNNYFHAVNI
KSDNGISVSNVVQFDPLGNNEADAVYSVDETNQWPVYDAMNLRRSKRRFVQPERFVGCDH
PGGTDTSWHLTAACRTSNWREEGEVQEADMNMPLSHLLCINASPTEELTLSEKRDTMSKS
KNVSKEVKSDVTTPRKPSVGNPSRSGVKYPRRPRVKNPRKDENTLAIVPVSSETGDPAFG
NCHMQRTPTNLSEEIEQLSLHYYNMKRYTANKKKKIPALEYLDYGTGWKGRPQPTKAQSK
SYRSSQTRMEDFDELKTYKKTTLSAGAYNKLINSYMKNIDSTSVKDESHIIDRWNQFKEA
TSAEMNKKTEPEEPPVEEEEEMSETEMLWREMEICMASSYFDDDEARVSAESLRKASENC
QHEFKLDDEVGVLCRICGFVSTEIKHVSAPFLEHKTWVADGNSCYRDETENKADGEEGLN
LFCDYTTIQARLSEESDNVWALIPELRKKLHFHQKRAFEFLWLNIAGSLIPALMEPLSKK
TGGCVVSHSPGSGKTFLIIAFLASYLKLFPGKRPLVLAPKTTLYTWYKEFIKWEIPVPVH
LIHGRRSYRVFKKNAVKFHGVPRPSQDVMHVLDCLDKIQKWHAQPSVLVMGYTSFLTLMR
EDSKFEHRKFMAKVLRESPGLLVLDEGHNPRSTKSRLRKVLMKVETDLRILLSGTLFQNN
FCEYFNTLCLARPKFVFEVLRRLDPKYKRKKRFDKARNLLENRARKLFLDKIARKIDASV
GEERMEGLNMLRKITNGFIDVYEGGNFDCLPGLQIYTLMMNSTDIQHEILVKLHKIMSTY
TGYPLELELLITLASIHPSLVRTSNCSAKFFSTEELLELEKIKFDFRKGSKVMFVLNLVY
RIIKNEKVLIFCHNIAPIYLLAEMFERIFRWRKGREILVLTGDLELFERGRVMDKFEEPG
GASRVLLASITACAEGISLTAASRVILLDSEWNPSKTKQAIARAFRPGQQKVVYVYQLLA
TGTLEEDKYRRTTWKEWVSSMIFSEAFVEDPSQWQAEKIEDDVLREIVAEDKVKSFHMIM
KNEKASTG
NT seq
3807 nt
NT seq
+upstream
nt +downstream
nt
atgaggaaaaggcatttatatcattccgagcatccgtttgatgaatatcctttcgaggtc
ttcgtccaagactcatggcaagctgtggaactcataagaattaagaatggattcatgact
ttgcatctgatagatggtcaatatctgattgagaagaaacccttctctgatttacgtgtt
aagtctcggaaggcaactttgcccgattgcacttgctttttgaggcctggtattgatata
tgcatcctttctcgccctcaggagacagaaagtctagatgaagagactccggaacctgtg
tgggttgatgctaaaataagttccattgagaggaagcctcatgactctgaatgctcgtgc
cagttttacataaacttgtatgataaccgtgctcctctcggttctgagaaaggaactctt
agcaaagagactgaagtaataggaatcaatgatatttgtatcctccaaaagcttgaaaag
aatgcatgcgaggatcagcactataggtggaatttctcggaggactgctcgacattgaaa
cgaactaagatatttttggggaaattctcatctgatatatcatggctgcttgttacatct
gttttgaagcagattgcatttgatgtgagatcggtgcagaacaagattgtctatcaaatt
ctggatcaagatgatgatagtcccttaaaatataataattatttccatgctgtaaatatc
aaatcggataatggtatttcggtatccaatgtggtccaatttgacccccttggaaataat
gaagctgacgcagtttatagtgttgatgaaaccaatcaatggccagtttatgatgctatg
aacttgcgacgctctaaacgcaggtttgtacaacctgagcgttttgttggttgtgatcat
cctggagggacagatactagttggcatcttacagctgcttgtagaactagcaactggaga
gaagagggagaggtacaagaagctgatatgaacatgccgctatcacacttgttatgcatc
aatgcaagtccaacggaagagcttaccctgtctgaaaaaagagataccatgtccaaaagt
aagaatgtatcaaaggaggtaaaatcagatgtgacgactccgaggaaaccaagtgtggga
aatccgagcagatcaggtgtgaaatatcccaggagaccaagagtgaaaaatccaaggaaa
gatgaaaatactcttgctattgttcctgtgtcttcggaaacaggtgatccagcctttgga
aactgtcatatgcagagaactccaacgaatttatcagaagagattgaacaactctctttg
cattattataacatgaaacgctacactgcaaacaagaagaagaaaattcctgctttagag
tatctagattatggaactgggtggaagggaagacctcaaccaacgaaagcacagagtaaa
agttataggtcttctcaaacacgaatggaagattttgatgaactgaaaacttacaaaaag
acaactctgagtgcaggtgcatacaataaacttataaattcgtatatgaagaacatcgat
tctacatccgtaaaagatgagtcgcacatcattgaccggtggaatcagtttaaggaagca
acgtccgcggaaatgaataagaaaacagaaccagaagaaccaccagttgaggaggaggaa
gaaatgtctgaaactgaaatgctgtggagagaaatggaaatatgtatggcatcatcatac
tttgatgacgatgaggctagagtatctgctgagtctctccggaaagctagtgaaaattgt
cagcatgaattcaaattggatgatgaagtcggggttctatgtcgtatctgtggctttgtt
agcactgaaataaaacatgtttccgcaccattcctggaacataaaacctgggtagcagat
ggtaattcgtgctacagagatgagacagagaataaagcagacggagaagagggcctgaat
cttttctgtgattacactaccatacaggcacgattatctgaagaaagtgacaatgtatgg
gcactaatccctgaacttaggaagaagttacatttccaccagaaaagggcctttgaattc
ctatggctaaatatcgcgggttctttgatacctgcactaatggagccattatcgaaaaaa
acaggtggttgtgtagtttctcattcaccgggatctgggaaaacctttctcattattgca
tttcttgctagctacttgaagttattcccgggaaagcggcctttggtccttgctccaaag
acaactctatatacttggtacaaggaatttatcaagtgggaaatccctgtgcccgttcat
ttaattcatggccgtagaagttatagagtcttcaagaagaatgcagtgaagtttcatgga
gttccgagacctagtcaagatgttatgcatgttttggattgtctagataaaatacaaaag
tggcatgctcaaccaagtgttcttgtcatgggctacacttcgttcttgacgttaatgcga
gaagattcgaagtttgagcacagaaaatttatggctaaggttctgcgtgaaagtccgggg
ctcctggtattggacgaagggcacaaccctcgaagtactaaatcgagattgagaaaggtt
ttgatgaaagttgagacagatctgaggatattgctttcaggtacattgtttcagaacaac
ttctgtgaatattttaacaccctgtgcctcgcaagaccgaaattcgtgtttgaagttttg
cggcgattagaccctaaatacaagagaaagaagcggttcgacaaagctcgcaatttgtta
gaaaaccgagcaagaaaactcttcctagacaaaattgccaggaagatcgatgctagcgtc
ggagaagagaggatggaaggtcttaacatgttgaggaaaatcaccaacgggtttattgac
gtgtacgaaggtgggaattttgactgcctccctggtttacaaatttacaccttaatgatg
aactcaacagacatacaacatgagattttggtaaaactccacaaaataatgtctacatat
actggctatccattggaattggagcttttgataacgctagcatcgatacatcctagtttg
gtccggacttcaaactgtagtgctaaatttttcagtacagaagagttgctggaacttgag
aagatcaaattcgattttagaaaaggttccaaggtgatgtttgttttgaaccttgtttat
cgaatcatcaagaatgaaaaggttctcattttctgccacaatattgcccccatttatttg
cttgcggaaatgtttgagagaatcttccgatggcgaaagggtagagaaatattggtcctt
acaggagacttggagctattcgagagaggaagagtgatggacaagtttgaggaaccaggt
ggtgcttcaagggtacttctcgcttcaattaccgcatgtgctgaaggcattagtttgaca
gctgcatctcgggtgattttattggattcggaatggaatccttccaagacaaagcaggct
attgcacgggctttccggcctggtcagcaaaaggttgtttatgtgtatcagctgttggca
actggcacgctcgaagaggacaagtatcgtaggaccacatggaaagaatgggtatccagt
atgatttttagcgaagcattcgtggaagatccgtctcagtggcaagcagaaaagatcgaa
gatgatgtattgagagagatagttgcagaggacaaagttaagtcatttcatatgataatg
aaaaacgaaaaggcttctacaggttga
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integrated database retrieval system
