Gossypium raimondii: 105773392
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Entry
105773392 CDS
T04129
Name
(RefSeq) transcription initiation factor TFIID subunit 5
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
gra
Gossypium raimondii
Pathway
gra03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
gra00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
105773392
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gra03021
]
105773392
03036 Chromosome and associated proteins [BR:
gra03036
]
105773392
Transcription machinery [BR:
gra03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
105773392
Coactivators
SAGA/TFTC/STAGA complex
105773392
Chromosome and associated proteins [BR:
gra03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
105773392
STAGA complex
105773392
TFTC complex
105773392
SAGA complex
105773392
SLIK complex
105773392
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
TFIID_NTD2
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_2nd
EIF3I
WD40_MABP1-WDR62_2nd
Beta-prop_EML_2
WDR55
Beta-prop_WDR90_POC16_2nd
NBCH_WD40
Beta-prop_EML
Beta-prop_IFT122_1st
ANAPC4_WD40
WD40_MABP1-WDR62_1st
Beta-prop_TEP1_C
WDR90_beta-prop_4th
Beta-prop_RIG_2nd
Beta-prop_WDR75_1st
Beta-prop_IFT140_1st
Beta-prop_SCAP
Beta-prop_WDR19_1st
Beta-prop_DCAF4
Beta-prop_EIPR1
Ge1_WD40
Beta-prop_SPT8
Beta-prop_Vps41
Beta-prop_HPS5
Beta-prop_WDR35_TULP_N
Beta-prop_RIG_1st
WD40_like
WD_LRWD1
Beta-prop_VPS8
Rab5-bind
PALB2_WD40
PPR_2
Cytochrom_D1
Beta-prop_EDC4L
LisH
Pox_F17
Motif
Other DBs
NCBI-GeneID:
105773392
NCBI-ProteinID:
XP_012450728
UniProt:
A0A0D2N571
LinkDB
All DBs
Position
7:50038750..50044735
Genome browser
AA seq
668 aa
AA seq
DB search
MENMQAVNSFVTAYLKKKGFKEAEQLLEDLQKKESAPIDFHNDPDLAKLIHHFSQSEDDV
ARYQDGYSKLRSWTYSSLDLYKHELLRVLYPVFIHSFMDLVAKGHLQEARTFFNAFHEDH
ELMHSRDLQKLEGVLSQSHLEEMEFARSLRQNKVNIKICQYSYGLLLQYLHKTQSTAMLG
VINEHINFQVTSGQPGSISDDTEVVTLIGSCQDAASLINQKEIHWGLLEDSLEERLEKEG
GLLSDSEKAEAENKEGDVDDSKKRSVEGGKQGASTKKLKKDKAVNATAKSARPEAKPTPA
APRVKPELTLPVMSTEVEQSILEDLRNRVQLSSIALPSVSFYTFLNTHNGLNCSSVSQDG
SLVAGGFSDSSLKVWDMAKLGQQAGSSTLQGENDSTSSEHVAGPNGVKRSYTLFQGHSGP
VYSATFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFSPVGHYFASSSH
DRTARIWSMDRIQPLRIMAGHLSDVDCVQWHANCNYIATGSSDRTVRLWDVQSGECVRIF
IGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLSSGRCVTPLMGHTSCVWSLAFSCEGTV
LASGSADCTVKLWDVTTSTKAPKNEEKSGNPNRLRSLKTLATKSSPVYSLRFSRRNLLFA
AGVLSKKY
NT seq
2007 nt
NT seq
+upstream
nt +downstream
nt
atggaaaatatgcaggctgtgaatagcttcgtgacagcttatttgaagaagaaaggattc
aaagaagcggagcaattgttggaggatcttcagaagaaggagtccgctccaatcgatttc
cacaacgaccctgatcttgctaagttaattcatcacttttcccagtcagaggatgatgtg
gcacggtaccaggatgggtatagcaaactgaggtcgtggacttatagttccctagattta
tacaagcatgagttgcttcgcgtgctttatccagtctttatacattcattcatggatctg
gtggcgaaaggacatttgcaagaggctagaaccttttttaatgcctttcacgaggaccat
gaactgatgcactcacgggaccttcaaaagttggaaggcgttctttcgcagtctcatttg
gaggagatggagtttgctcgttctcttaggcagaataaagttaacatcaagatatgtcag
tattcatatggccttctgctgcaatatttgcataaaacacagtccactgctatgctgggg
gtcatcaatgaacatatcaatttccaagttacttctggacagcctggttcgatttctgat
gatacagaggttgtaacactaattggaagctgccaggatgcagctagtctgataaatcag
aaagaaatacattggggattactagaagactccttagaagaacgtttggagaaggaagga
ggtttgctttcagattctgaaaaggcagaagcagagaacaaagaaggggatgtagatgac
agtaagaaaagatcagtagaaggtggaaagcaaggtgcttcaacaaaaaagttgaaaaag
gacaaagctgttaatgcgacagcaaaaagtgctcgccctgaggctaaacccacccctgct
gcaccacgagtcaagccagagctcactttgcccgtaatgtctacagaggtagaacagtct
atacttgaggacttaagaaaccgtgtacagttgagtagcattgcattgccatctgtcagc
ttttatacgttcctcaacacgcataatggtttgaactgttcatcagtatcccaggatgga
tctttggttgctggagggttctcagactcatcactgaaggtttgggatatggcaaagctg
ggccaacaagctggtagttctactttgcagggtgaaaatgattctacttcaagtgaacat
gttgcgggaccaaatggtgtgaaaagatcctatacattgtttcagggtcattcaggacca
gtttattcagccacctttagtcctcttggtgattttattctttcctcttcagcagataca
acaattcgcttgtggagcacaaaactaaatgcaaatcttgtttgctacaagggtcataat
tatcctgtatgggatgttcagtttagtcctgtaggacactattttgccagctcttcacat
gatcgaacagcaaggatttggtcaatggatagaatacaacctttgagaataatggcagga
cacttgtctgatgttgattgcgtgcaatggcatgccaactgcaactatattgccacaggc
tctagtgacagaacagtaagattgtgggatgtacaaagtggagaatgtgttcggattttc
attggtcataggagtatgatattgtcactagcaatgtcacctgacggccgctatatggct
tctggtgatgaagatggcacaatcatgatgtgggacctttcaagtggacggtgtgttacg
cctttgatgggtcacacctcttgcgtatggtcacttgctttcagttgtgaaggtacggtt
ctagcatctggatcagctgattgcactgtaaaattgtgggatgtcacaacaagcacaaag
gccccgaaaaacgaagaaaagagtggaaatcccaacagactgagatcgttgaaaaccttg
gcaaccaagtctagtccagtgtatagtttgcggttttcgaggaggaatctgctgtttgcg
gctggggtgctctctaagaaatattaa
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