Gossypium raimondii: 105773658
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Entry
105773658 CDS
T04129
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 15 isoform X1
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
gra
Gossypium raimondii
Pathway
gra03013
Nucleocytoplasmic transport
gra03015
mRNA surveillance pathway
gra03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
gra00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
105773658
09122 Translation
03013 Nucleocytoplasmic transport
105773658
03015 mRNA surveillance pathway
105773658
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gra03019
]
105773658
03041 Spliceosome [BR:
gra03041
]
105773658
Enzymes [BR:
gra01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
105773658
Messenger RNA biogenesis [BR:
gra03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
105773658
Spliceosome [BR:
gra03041
]
Complex C
Other components
EJC/TREX
105773658
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
105773658
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
YihI
Motif
Other DBs
NCBI-GeneID:
105773658
NCBI-ProteinID:
XP_012451180
UniProt:
A0A0D2UCK5
LinkDB
All DBs
Position
6:22033375..22038107
Genome browser
AA seq
428 aa
AA seq
DB search
MGETRDNDAYEEELLDYEEEEEKAPDSVTAKVNGEAGKKGYVGIHSSGFRDFLLKPELLR
AIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSSLQQIEPTPGQVIALV
LCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNVKVHKDLLKNECPHIVVGTPGRILA
LARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPV
CKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVN
RAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGHKRILVATDLVGRGIDIERVNI
VINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDVLNQVQERFEVDIKELPEQI
DTSTYMPS
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atgggagaaacgagggacaacgatgcttacgaggaagagcttctcgactacgaggaagaa
gaagagaaagcacctgactccgtcactgctaaagtcaacggcgaggccgggaagaagggc
tatgttgggattcacagttcaggattcagagacttccttttgaagccagagcttcttcgg
gcaattgttgactctgggtttgagcacccttccgaagtgcaacatgaatgtattccccaa
gctatactgggtatggatgtcatttgccaagctaaatcagggatgggaaagactgcggtt
tttgttttgtcatcattacagcagattgagccaactccgggacaagttattgctctcgtt
ttatgccatacaagagagttagcttatcagatttgtcatgagttcgagaggttcagtact
tacctgcctgatattaaggttgctgtcttctatggtggtgtcaatgtcaaagtacacaaa
gatctgctgaaaaatgaatgcccccacattgttgttgggacacctggaaggatattggct
ctggctagagacaaggacctttcattgaagaatgtcaggcatttcattcttgatgaatgt
gacaagatgcttgaatcacttgacatgaggagagatgtgcaggaaattttcaagatgacc
ccccatgataagcaagttatgatgttttctgctacgctcagcaaagaaattcgcccggtt
tgcaagaaatttatgcaagatccaatggaaatttatgtggacgacgaggccaagttgacc
cttcatggtcttgtgcagcactacatcaaattgagtgagctggagaaaaaccgcaagttg
aatgacctccttgatgcattggacttcaaccaagttgttatctttgtcaaaagtgtgaac
cgagctgctgagttaaacaagttacttgtagagtgtaattttccttctatatgcatccac
tctggcatgtcccaggaggaaaggctgactcggtacaagggtttcaaggaggggcataaa
agaattctagtggccacagatttggttggaaggggaattgacattgaacgtgttaacatt
gtcatcaactacgatatgccagattctgctgatacatacctgcacagggttggtagggct
ggtaggtttggtaccaagggtcttgcaattacatttgtttcatctgcttcagattctgat
gtgctcaatcaggtccaggagaggtttgaggtggatataaaggagcttcctgagcagatt
gatacatctacatacatgccatcataa
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