Gossypium raimondii: 105773890
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Entry
105773890 CDS
T04129
Name
(RefSeq) probable CCR4-associated factor 1 homolog 6
KO
K12581
CCR4-NOT transcription complex subunit 7/8
Organism
gra
Gossypium raimondii
Pathway
gra03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gra00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
105773890
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gra03019
]
105773890
Messenger RNA biogenesis [BR:
gra03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
105773890
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
105773890
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
105773890
NCBI-ProteinID:
XP_012451534
UniProt:
A0A0D2VA06
LinkDB
All DBs
Position
6:31473071..31474773
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AA seq
271 aa
AA seq
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MSLLPKSDSIQIREVWNDNLEEEFALIREIVDDYPYIAMDTEFPGIVLRPVGNFKSSYDY
HYQTLKDNVDMLKLIQLGLTFSDEKGNLPTCGTDKYCIWQFNFCEFNVDEDVFANDSIEL
LRQSGIDFKKNNEKGIDAMRFGELLISSGIVLNDSVYWVTFHSGYDFGYLLKLLTCQNLP
DTQVGFFNLINIYFPTLYDIKHLMKFCNSLHGGLNKLAELLEVERVGICHQAGSDSLLTS
CTFRKLKENFFSGTLEKYSGVLYGLGVENAH
NT seq
816 nt
NT seq
+upstream
nt +downstream
nt
atgtctctgttgccaaagagcgattcaatccaaatccgtgaggtatggaacgataacctt
gaggaggaatttgctttgattcgtgaaattgttgatgattacccgtacattgccatggac
accgagtttccaggcattgttttacgtccggttggcaatttcaagagcagctatgactat
cactaccaaaccttgaaagacaatgttgatatgttaaagttgattcaattgggtcttacc
ttttcagatgagaaagggaacttgcctacctgtggaactgataagtattgcatttggcaa
tttaatttttgtgagtttaatgtcgacgaggatgtctttgctaatgattctattgagctt
ttgagacaaagtgggattgatttcaagaagaacaatgagaagggtattgatgcaatgagg
ttcggtgagcttttaatatcttcagggattgttttaaatgatagcgtgtattgggttact
ttccacagtggttacgatttcggttacttgcttaagctcttgacttgccagaacttaccg
gatacgcaagttgggttctttaatttgatcaatatttactttcccacactctatgatatc
aagcatttgatgaagttttgtaacagtttgcatgggggattgaacaagcttgcagagttg
ctggaagtggaaagagttgggatctgtcatcaagcaggttctgatagtttgctcacatct
tgtacattcaggaaactcaaggagaatttctttagtggtactttggaaaaatattccggt
gtattgtatggtttaggtgttgaaaatgctcattga
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