Gossypium raimondii: 105774189
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Entry
105774189 CDS
T04129
Name
(RefSeq) probable CCR4-associated factor 1 homolog 6
KO
K12581
CCR4-NOT transcription complex subunit 7/8
Organism
gra
Gossypium raimondii
Pathway
gra03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gra00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
105774189
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gra03019
]
105774189
Messenger RNA biogenesis [BR:
gra03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
105774189
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
105774189
BRITE hierarchy
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Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
105774189
NCBI-ProteinID:
XP_012452035
UniProt:
A0A0D2UJ80
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Position
6:57837206..57838510
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AA seq
274 aa
AA seq
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MSLLPKSDSIHIREVWDDNVEEEFALIREIVDDYPYVAMDTEFPGIVLRPVGYFKSSYDY
HYQTLKDNVDMLKLVQLGLTFSDEKGNLPTCGTDKYCIWQFNFREFNVNEDVFANDSIEL
LRQSGIDFKKNNEKGIDAMRFGELLMSSGIVLNDNVHWVTFHSGYDFGYLLKLLTCQNLP
DTQVGFFSLINIYFPTLYDIKHLMKFCNSLHGGLNKLAELLEVERVGICHQAGSDSLLTA
CTFRKLKENFFSGSLEKYSGVLYGLGVENGQSTY
NT seq
825 nt
NT seq
+upstream
nt +downstream
nt
atgtctttattgccaaagagcgattcaattcatatccgtgaggtatgggatgataacgtt
gaggaagaatttgctttgattcgtgaaatagttgatgattatccttatgttgccatggat
actgaattcccaggcattgtattacgtcccgtaggttatttcaaaagcagttatgattat
cactatcaaactttgaaagacaatgttgatatgttaaaacttgttcaattaggtcttact
ttctcagatgagaaagggaacttacctacatgtggaactgataaatactgcatttggcaa
ttcaatttccgcgaatttaacgtcaacgaagatgtgttcgctaatgattctatcgagctt
ttaagacaaagtgggattgatttcaagaaaaacaatgaaaagggtattgatgcaatgaga
tttggtgaacttttaatgtcatcagggattgttttgaatgacaatgtgcattgggttact
ttccatagtggttacgatttcgggtatttgcttaagctcttaacttgccagaatttgcca
gatacacaagttggattctttagtttgataaacatttactttcccactttgtatgatatc
aaacatttgatgaagttttgcaatagtttgcacggtggattgaataagctcgcggagtta
ttggaagtggaaagagttgggatttgtcatcaagcaggttcagatagtttgctcacggct
tgtacattcaggaaactgaaggagaatttctttagtggttcgttggaaaagtattccggt
gtgttatatggtttaggtgttgagaatggacagagtacgtattga
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