KEGG   Gossypium raimondii: 105774281
Entry
105774281         CDS       T04129                                 
Name
(RefSeq) protein ROOT INITIATION DEFECTIVE 3
  KO
K14829  pre-rRNA-processing protein IPI3
Organism
gra  Gossypium raimondii
Brite
KEGG Orthology (KO) [BR:gra00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:gra03009]
    105774281
Ribosome biogenesis [BR:gra03009]
 Eukaryotic type
  Pre-60S particles
   5-FMC complex
    105774281
SSDB
Motif
Pfam: WD40 WD40_Prp19 Beta-prop_EML_2 WD40_WDHD1_1st WD40_CDC20-Fz WDR55 Beta-prop_TEP1_2nd Beta-prop_EML EIF3I NBCH_WD40 Beta-prop_TEP1_C WD40_MABP1-WDR62_2nd Beta-prop_HPS5 Beta-prop_CAF1B_HIR1 Beta-prop_WDR90_POC16_2nd ANAPC4_WD40 WDR90_beta-prop_4th Beta-prop_RIG_2nd Beta-prop_IP5PC_F WD40_MABP1-WDR62_1st Beta-prop_IFT140_1st Beta-prop_DCAF4 Beta-prop_Vps41 Beta-prop_VPS8 Beta-prop_WDR75_2nd Beta-prop_WDR19_1st Beta-prop_IFT122_1st Beta-prop_SCAP WDR54 Beta-prop_SPT8 Beta-prop_LRRK2 Beta-prop_NWD2_C Beta-prop_BBS7 Nucleoporin_N Ge1_WD40 Beta-prop_DCAF12
Other DBs
NCBI-GeneID: 105774281
NCBI-ProteinID: XP_012452176
UniProt: A0A0D2U4L3
LinkDB
Position
6:complement(1606653..1609546)
AA seq 444 aa
MSVVIASSSIDGGIGCWDLQTGAEQLRYKTCASPPHGLTTVGCRFLACSQLRDPSATSGH
LLYWSWSKPQAQVKSFPVEPIKPLIANSDGTYIVGGGSSGDIYIWEVATGRLLKKWHAHY
RAITCLVFSEDDSLLISGSEDGCVRVWSLFMIFDDVRRQQVSHLYEYSFTEHTLRVTDIV
IGYGGGNAIIVSASEDRTCKVWSLSKGRLLRNVVFPSIIDAIAIDPGEHVFYAGSRDGKI
YITALNAESSPSDNYGLHIIGSLTDQSKPVTCLAYSAEGNLLLSGSEDGMIRVWDVKTQN
ITRMFRHSKGPVNNIVIVRLPYPLGRAESKSQPSSRKHELSLPPPLEKYANSSDEDMDNK
AIVMLPDTIDLPSYLSSQLINDHIKQLQQQGSSAVAEMEAKRLKADCQRSKEMFQQLRKV
YDNLQEFCVNELLDEQTMEGSKGN
NT seq 1335 nt   +upstreamnt  +downstreamnt
atgagtgtagtgatagcatcatcttcaatcgacggcggcatcggttgctgggacctacag
acaggggcagagcaactccgttacaaaacttgcgcctcccctccacacggcctcaccacc
gtcggttgccgtttcctcgcctgctctcaacttcgtgacccctccgccacctccggtcac
ctcctttattggtcttggtccaagcctcaagcccaagttaaaagctttcccgttgaaccc
attaaaccgcttattgctaatagcgatggtacttacatagttggtggaggttcatcaggt
gatatttacatttgggaggttgctacgggtaggttattgaagaaatggcatgctcattat
agagcaattacatgtttagttttctctgaagatgattcacttctcatttccgggtccgaa
gatggatgcgttcgagtttggtcgcttttcatgatattcgatgatgttagacggcagcag
gttagtcatctttatgagtatagttttacggaacatactctgcgtgtaacagatattgtt
attggttatggcggagggaatgcgatcatcgtgtcggcttccgaggaccgaacttgtaag
gtatggagcttatccaagggaagattattacgaaacgttgtgtttccttccatcattgat
gcaattgcaatagaccctggtgaacatgtcttctatgccggcagccgagatggtaaaatt
tatatcactgctcttaatgccgaaagttcccctagcgacaactatggattgcacatcatc
ggttcactaactgatcaaagtaagccagttacatgcttggcatatagtgctgaaggaaat
ttgctattatctggatcagaggatggcatgattcgagtttgggatgtgaaaacgcaaaac
attactcgcatgttccgacattccaaaggccctgtgaacaatatcgtcattgttagactc
ccatacccccttggtcgggcagaatcaaaatcacaaccttcctcaagaaagcatgaactt
tcactcccacctccgctagaaaaatacgcaaattcaagcgatgaagacatggacaacaag
gctattgttatgctcccagatactatcgacctcccttcatacctcagttctcagctaatc
aatgatcacattaaacaacttcagcaacaagggtcttcggctgtggccgaaatggaagcg
aagagactgaaggctgattgtcaaagatcaaaggagatgtttcaacaactgagaaaagtt
tatgataacttacaggaattttgtgtcaatgagctcttagatgaacaaacaatggaagga
tccaaagggaattaa

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