KEGG   Gossypium raimondii: 105774427
Entry
105774427         CDS       T04129                                 
Name
(RefSeq) DNA-directed RNA polymerase D subunit 2b
  KO
K16252  DNA-directed RNA polymerase IV and V subunit 2 [EC:2.7.7.6]
Organism
gra  Gossypium raimondii
Pathway
gra03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:gra00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    105774427
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:gra03021]
    105774427
Enzymes [BR:gra01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     105774427
Transcription machinery [BR:gra03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol IV and V specific subunits
     105774427
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_1 RNA_pol_Rpb2_7 RNA_pol_Rpb2_4 RNA_pol_Rpb2_3 RNA_pol_Rpb2_2 RNA_pol_Rpb2_5 DUF2002 DUF7115
Other DBs
NCBI-GeneID: 105774427
NCBI-ProteinID: XP_012452401
UniProt: A0A0D2LUE5
LinkDB
Position
7:complement(49961202..49967167)
AA seq 1204 aa
MGASPDGKGNGGMGSTSGEKFANGTDLNMDIDEDDDVFDELVSVQELGEEFLRNFCRKAA
VSFFNQYGLVSHQINSYNDFIKYGLQNTFDSFGEFVIHSGYDPSKKGEGDWRHARVKFGK
VTVERPTFWAVTGGNELNMLPRHARLQNMTYSSRMKVTVELQVYTAKSVKSDKFKTGREE
IVEEEIVHQDNREIIIGRIPVMVKSELCWMNEVEKSDCDFDHGGYFLIKGAEKIFIAQEQ
ISLKRLWISNIQGWTVAYRSEVKRNRLIIRLVENSKVEYIKGGEKILTVFFLSIEIPVWI
LFFALGVRSDKEVVSLIDYGSSDSSISNILFASIRDADWKCRNFREESAALNHLDRLRKE
TRFPPEESVEECLGKYLFPSLKGFKQKARFLGYMVKSLLQAFTGHRKCDNRDDFRNKRLE
LAGELLEREMKVHIAHARRRMAKTLQRDLYADRTVRPIEHYLDASIVTNGLSRAFSTGAW
SHPYKKMERISGVVANLGRANPLQTMVDLRKTRQQVQYTGKVGDARYPHPSHWGKVCFLS
TPDGENCGLVKNLATTALVSTNIVKSVVESIVDTLFDSGMEKVVNDTSSSLDGKDKVFLN
GEWVGVCEDSLFFAAELRRKRRRKELPYQVEIKRDEHKGEVRIFTDAGRILRPLLVVENL
FKLKAFKGKENYAFQPLLDKGIVELIGAEEEEDCRTAWGIRYLLTEVEGKQPVKYTHCEL
DMSFLLGLSCGIIPFANHDHARRVLYQAQKHSQQAIGFSTTNPNIRVDTLSHQMYYPQRP
LFHTMTADCLGKSGFPLGQNRLEPKPELYNGQNAIVAVNVHLGYNQEDSLVMNRASIERG
MFRTEHVRSYKAEVDNKEIQEKRRKAEDIVNFGKTESKIGRVDSLDDDGFPYIGASLQSG
DIVIGRFAESGADHGVKLKHTERGMVQKVVLSSNDDGKNFAVVSLRQVRSPCLGDKFSSM
HGQKGVLGFLESHENFPFTTQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIACGGSKKH
ATPFSTLSIDAITEQLHRAGFSRWGNERVYNGRTGEMVRSLIFMGPTFYQRLVHMAEDKV
KFRNTGPVHPLTRQPVADRKRYGGIKFGEMERDCLIAHGASANLHERLFTLSDCSQMHVC
QNCKNAANVIERTVAAGRKIRGPYCRVCQSGDEIVKVSVPYGAKLLCQELFSMGISLKFE
TQLC
NT seq 3615 nt   +upstreamnt  +downstreamnt
atgggggcttcgccagatggaaagggaaacgggggaatgggcagtactagtggtgaaaag
tttgcaaatggaactgatttgaatatggatatagatgaagatgatgatgtgtttgatgag
ctggtcagtgtgcaagagctgggagaagagtttttgaggaatttctgtaggaaagctgcc
gtgtctttcttcaatcagtatggtctagtaagtcatcaaataaactcttacaatgatttc
ataaaatacggtctccagaacaccttcgactcctttggggagtttgttattcattctggt
tatgatccatcgaagaagggagaaggtgactggcgtcatgccagagtgaagtttgggaaa
gtcaccgttgagaggccaaccttttgggctgtcacaggtggcaatgagctcaacatgctt
cctaggcatgcccgccttcagaacatgacttactcatccaggatgaaggttactgttgag
cttcaggtatatacagcaaaaagtgtaaagagtgacaagtttaaaactggaagagaagaa
attgttgaagaggagatcgtgcatcaagataacagggagattataattggaaggatccct
gtgatggttaagtctgagctgtgctggatgaatgaggttgaaaagtctgattgtgatttt
gatcacggaggttattttctcatcaagggcgcagagaagatattcattgcacaagagcaa
atctctctgaagaggctctggatttcaaacatacagggctggactgttgcctacaggtcg
gaggtgaagagaaataggctaattatcagactagtggagaattccaaagtagaatatatc
aaagggggggagaaaatcctgactgttttcttcttgtcgattgagatccccgtttggatt
ttattttttgcccttggtgtacgatcagacaaggaagttgtaagtctgattgattatgga
agcagtgattcaagtatatcaaacatactgttcgcgtcgattcgtgatgctgattggaaa
tgccgcaattttcgtgaagaaagtgctgctctcaaccatttggataggttacgcaaagaa
actagatttccccccgaagaaagtgttgaagagtgccttggaaagtatctgtttccctct
ctcaaaggattcaagcagaaggctcggttcttggggtacatggtcaagagtcttttgcaa
gcattcaccggtcatcgaaaatgtgacaatagagatgattttaggaacaagaggttggag
ttggccggtgagctgcttgagcgtgagatgaaagttcatattgcccatgcaaggagacgt
atggcaaagactctgcagagggatctttatgcggatcgtactgttcgtccaattgagcat
tatcttgatgcttccatagttacaaatgggctctctagagcattttctactggagcttgg
tctcatccttacaaaaagatggaaaggatatcaggtgtagtggcaaatctcggacgagca
aatccattgcagacaatggttgatttgagaaaaacacgacagcaggttcagtacactgga
aaggtcggagatgcgagatacccacatccttctcattggggaaaagtttgctttctctct
actcctgatggtgaaaattgtgggcttgttaagaatctggctaccactgctcttgtgagt
acgaacatagtgaaatccgtagtggaatccatagtcgacacgttgtttgattctggaatg
gagaaagtggttaatgatacttcaagctcacttgatgggaaagataaggtctttctgaat
ggggaatgggttggtgtttgtgaagattctcttttctttgccgctgaacttagaagaaaa
cgacgcaggaaagaattgccgtatcaggtggaaattaaaagagatgagcataaaggagag
gtgcggatctttactgatgctgggaggattctacgcccgcttttagttgttgaaaatctg
ttcaaactaaaagcattcaagggcaaggaaaattatgctttccagccccttttagacaag
gggattgttgaactcattggagctgaagaggaagaagattgtcgcacggcatggggtatc
aggtacctcttaaccgaagttgaggggaagcaacctgtcaagtacacgcattgtgagctg
gacatgtcatttcttttgggtttaagctgtggaatcattccatttgccaatcatgatcat
gcgcggagggttctttaccaagcccagaagcattctcagcaggcaattgggttctctaca
acgaacccaaacatcagggtggacactttgtcgcaccagatgtattatccccaaaggcca
ctcttccatacgatgactgctgattgtcttggtaaatctggatttcctcttggtcagaat
agattggaaccgaagccagaactctacaatggccagaatgctattgtggctgtaaatgtt
catctcggttacaaccaagaggattccttggtaatgaaccgggcctcgatagagcgtggg
atgttccgcaccgaacatgtaagaagttacaaagctgaagtagataacaaggaaatccag
gagaagaggcggaaggctgaagatattgtaaactttggaaaaacagaaagtaagattgga
cgggtggacagccttgatgatgatggttttccttatatcggtgcttccctgcagtctggt
gacattgtcattgggaggtttgcggaatctggagctgatcatggtgtaaaactgaagcac
accgaaagaggcatggttcagaaagttgtgttatcttcaaatgatgatgggaaaaatttt
gctgtggtgtctctgagacaggttcgttctccctgtcttggagacaagttctcaagcatg
catgggcaaaagggggtccttggttttctggagtctcatgagaactttcctttcacaact
caaggaatagttcctgatatcgtgattaacccacatgcatttccttcacgacaaacgcca
ggtcaactcttggaggctgccttgggaaaggggatcgcctgtggtgggtcgaagaaacat
gccacccctttctccactctctccatagatgccattacagaacagcttcacagggctggg
ttttcaagatggggaaatgagagagtttacaatggtcggactggtgagatggttcggtca
ctcatatttatgggtccaacattctatcagcgtcttgtccacatggctgaagacaaagtg
aaatttcgtaacactggacctgtgcacccacttacaaggcagccagttgcagaccggaaa
cgttatggcgggatcaaatttggtgagatggagcgggactgccttattgctcatggtgca
tcagccaacttgcatgagcgcctcttcacgcttagcgattgctcacagatgcatgtatgt
cagaattgcaaaaatgctgcaaatgttattgaacggaccgtagcagctggtcggaagatt
aggggaccctattgccgggtttgccagtcaggggatgagattgtgaaggttagtgtgccg
tatggtgccaagttactgtgccaggaactattcagcatggggattagtctgaaatttgag
acacagctttgttga

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