Gossypium raimondii: 105774816
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Entry
105774816 CDS
T04129
Name
(RefSeq) probable rhamnogalacturonate lyase B
KO
K18195
rhamnogalacturonan endolyase [EC:
4.2.2.23
]
Organism
gra
Gossypium raimondii
Brite
KEGG Orthology (KO) [BR:
gra00001
]
09190 Not Included in Pathway or Brite
09191 Unclassified: metabolism
99980 Enzymes with EC numbers
105774816
Enzymes [BR:
gra01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.23 rhamnogalacturonan endolyase
105774816
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Motif
Pfam:
Rhamnogal_lyase
CBM-like
fn3_3
EMC7_beta-sandw
CarboxypepD_reg
AHSA1
Endotoxin_C
RhgB_N
Motif
Other DBs
NCBI-GeneID:
105774816
NCBI-ProteinID:
XP_012452841
UniProt:
A0A0D2SLY5
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Position
6:2992434..2999480
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AA seq
649 aa
AA seq
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MPFIGVQLHTQDTHVMIDNGLLQLTLLNPDGIVTGIRYNGIDNLLEVLNGEDNRGYWDLV
WNSPGTPGTTGSFDVIKGTSFKVIVENEDQVEVSFTRTWDSSQEGKLVPLNIDKRFIVLR
GCSGFYTYAIYEHLKDWPGFNLAETRIAFKLRKDKFHYMAMADNRQRYMPLPDDRLSGRG
QALAYPEAVLLVNPVEPDFKGEVDDKYQYSCDNKDSQVHGWICTTDQPAVGFWMVTPSNE
FRSGGPVKQNLTSHVGPTTLAVFLSAHYTGEDLVPKFSAGEAWKKVFGPVFIYLNCTMDG
DEPLSLWEDAKQQMIIEVQSWPYTFPASDDFPKSNQRGNVNGRLLVNDRYASDDNIPANG
AYIGLVPPGNVGSWQRECKDYQFWTKTDINGYFLINDIRPGDYNLYAWVPGFIGDYQYSA
AITITPGSEIEVGDLVYKPPRNGPTLWEIGIPDRSAAEFYVPDPNPKYINKVYVNHPDRF
RQYGLWERYAELYPNEDLVYTVGTSDYKKDWFFAQVTRKIDTNKYQGTTWQIRFKLDNVD
QGSSYKLRVAIASATFSELQVQINDPKTNPLFSSGLIGRDNSIARHGIHGLYWLYNVDVP
GKLLVQGDNTIFLTQPRSSSPFQGIMYDYIRLEGPSKLSSNEEYMSSTL
NT seq
1950 nt
NT seq
+upstream
nt +downstream
nt
atgccatttattggggttcagctccacactcaagacacccatgtgatgatagataatggc
ttactccaactgacattattgaaccctgacgggatcgtgaccggcattcgatataacggc
atcgataatttactagaagttctaaatggtgaagacaatcgagggtattgggaccttgtt
tggaactcaccaggaactcctggtactactggctcctttgacgtgattaaaggaacaagt
ttcaaagtaatagtggaaaatgaggatcaagttgaggtttctttcacaagaacttgggat
agttcccaagagggcaagcttgttcctttgaatattgacaaaaggttcatagtgttgcgt
ggttgctcaggcttttacacttatgccatttatgagcacttaaaagattggcctggtttt
aaccttgctgaaaccagaatcgcattcaagctcagaaaagacaagtttcactacatggcc
atggcagacaataggcaaaggtacatgccattgcctgatgaccgtttatcaggaagaggt
caagccctggcttacccagaagctgttctcctcgttaatccagtggagcccgacttcaaa
ggagaggtggatgacaagtaccaatattcatgtgataacaaagacagccaagtccatggc
tggatctgcaccaccgaccaaccggcagtagggttctggatggtcacacccagcaacgag
ttccggtccggtggtccagtcaaacagaacctaacctctcatgttggtcctacaaccctt
gctgtgtttctgagtgctcattataccggggaagatttggtgccgaaattcagtgccggt
gaggcctggaagaaagtgttcggccctgtttttatctatcttaattgtacaatggacgga
gatgagccgctttcgctttgggaggatgctaaacaacagatgataattgaagttcaaagc
tggccttatacatttccagcctcagatgatttccctaaatccaaccaacgtggaaatgtc
aacggtaggcttcttgtcaatgacagatatgctagtgatgacaacataccagccaatgga
gcttacataggattggttccaccaggcaatgttgggtcttggcaaagagaatgcaaggac
tatcaattttggaccaagacagacataaatggctattttttgatcaatgacataagacct
ggtgattataacctttatgcatgggttcctggctttattggagattatcaatatagtgct
gccattaccataactccaggtagtgaaattgaggtcggcgatctggtatacaaacctcca
cgaaacgggccgacgttgtgggaaataggaattcctgatcgttctgctgcggaattttat
gtcccggatcctaaccctaagtacatcaacaaagtttatgtcaaccatcctgataggttt
agacagtatggactttgggaaagatatgcagaactgtatcccaatgaagatttagtttac
acagttggcactagtgactataaaaaagactggttctttgcccaagtaaccaggaaaatt
gatactaacaagtatcaaggaaccacatggcaaattagattcaaacttgacaatgtagat
cagggtagttcatataaattaagagtggcgattgcttctgcaactttttccgaattgcag
gttcaaatcaatgatccgaaaactaatcctttgttttcgagcgggctaatcgggagggat
aactcgatagcaaggcatggaattcatggactctactggctttacaatgtagatgtacct
ggaaaattgttggttcaaggtgacaacactatcttccttacgcaaccgcgaagtagtagt
ccttttcaaggtatcatgtacgattacattcgactcgaaggtccctcaaaattaagttct
aatgaagaatatatgtcgagtacattgtaa
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