Gossypium raimondii: 105774829
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Entry
105774829 CDS
T04129
Name
(RefSeq) polygalacturonase isoform X1
KO
K01213
galacturan 1,4-alpha-galacturonidase [EC:
3.2.1.67
]
Organism
gra
Gossypium raimondii
Pathway
gra00040
Pentose and glucuronate interconversions
gra01100
Metabolic pathways
Module
gra_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
gra00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
105774829
Enzymes [BR:
gra01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.67 galacturonan 1,4-alpha-galacturonidase
105774829
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GFIT
Motif
Pfam:
Glyco_hydro_28
Pect-lyase_RHGA_epim
Beta_helix
Motif
Other DBs
NCBI-GeneID:
105774829
NCBI-ProteinID:
XP_012452852
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Position
9:7934932..7943070
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AA seq
408 aa
AA seq
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MAPHLNIVPSMFVLLLLFISASKVQSGAIDVVAKFGAKADGKTDLSKPFLDAWKEACASV
TPSTVVIPKGTYLLSKVNLEGPCKAPIEINVQGTIKAPADPSAFKDPNWVRFYSIENFKM
SGGGIFDGQGSIAYEKNKDPHNRAFRVKLPVNIRFDFLTNALIQDITSKDSKLFHVNVFA
CKNITLERFKVEAPADSPNTDGIHMGKSDGVNLIGCDIKTGDDCISIGDGTKNLAIKDIT
CGPGHGISIGSLGKYPNEEPVEGVKVTNCTITNTSNGARIKTWPGESPGVVSDVHFEDII
VNNVSSPILIDQKYCPWSKCKINEESKVKLSNISFKNIRGTSALPEAIKFICSGSSPCQN
VELADIDIKHTGPEPATSQCLNVKPITSGKLNPTPCSSPVPKTLSATA
NT seq
1227 nt
NT seq
+upstream
nt +downstream
nt
atggcaccacaccttaatattgttccttccatgtttgtgcttttattattattcatttca
gcctctaaagttcaatcaggcgctattgatgttgttgccaagtttggcgcaaaagctgac
gggaaaacggatttgagtaagccatttttggatgcttggaaagaagcatgtgcctctgta
accccatcaacagttgtgattcctaaagggacatatttattatcaaaagtaaacttagaa
ggtccatgcaaggctcctattgagattaatgttcagggcactataaaggctccggctgat
cccagtgctttcaaggaccctaattgggttagattctatagtattgaaaatttcaaaatg
tccggcggaggaattttcgatggtcagggaagcattgcttatgagaagaataaagatccc
cacaatcgtgcatttcgcgtcaaactccccgttaatataaggtttgactttttgaccaac
gcattgatacaagatataactagcaaagacagtaaactattccacgttaatgtttttgca
tgcaaaaacattaccctcgaacgtttcaaggtagaggcaccggcagatagcccaaacaca
gatgggattcacatgggcaaatcagacggggtaaatcttattggatgtgacattaaaact
ggtgatgattgtatttctatcggagatggcactaaaaatttggccataaaagatatcact
tgtggaccaggacatggtataagtatcggtagtcttggaaagtacccaaatgaagagcca
gttgagggagttaaagtcacaaactgcaccatcactaatacttcgaatggagctcgaatc
aaaacttggccaggcgaatctcctggggtagtatcagatgtacattttgaggatattatc
gtgaataatgtctcttcccctatcctaattgatcaaaaatattgcccatggagcaaatgc
aagataaatgaagaatcgaaagttaaactaagcaacattagcttcaagaacatccgtggc
acatctgcgcttccagaagctatcaagtttatttgcagcggttcttcgccatgtcaaaat
gtggaacttgcagacattgatattaagcacaccggacctgaacccgcaacatcccaatgt
ttgaatgtcaagcctataactagtggcaaattaaacccgactccatgttccagccctgtc
ccaaaaaccctaagtgccaccgcttaa
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