Gossypium raimondii: 105774830
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Entry
105774830 CDS
T04129
Name
(RefSeq) LOW QUALITY PROTEIN: polygalacturonase
KO
K01213
galacturan 1,4-alpha-galacturonidase [EC:
3.2.1.67
]
Organism
gra
Gossypium raimondii
Pathway
gra00040
Pentose and glucuronate interconversions
gra01100
Metabolic pathways
Module
gra_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
gra00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
105774830
Enzymes [BR:
gra01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.67 galacturonan 1,4-alpha-galacturonidase
105774830
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Gene cluster
GFIT
Motif
Pfam:
Glyco_hydro_28
Pect-lyase_RHGA_epim
Motif
Other DBs
NCBI-GeneID:
105774830
NCBI-ProteinID:
XP_052488869
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Position
6:14180076..14181588
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AA seq
409 aa
AA seq
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MAPHLDIVPSMFVLLLLFISASKVQSDALDVVAKFGAKADGKTDLSKATILDARKEACAS
VTPSAVVIPKGTYLLTKVNLEGPCKAPIEINVRGTIXALGDPSVFKDPNWVRFYSIENFK
MSGGGIFDGQGSIAYEKNKDPHNRAFRSKLPMNIRFDFVTNALIQDITSKDKKLFHVNXF
CMQNITLERFKVEAXEDSPNTYGIHLGKSTGSILLSXDIKTGDDCISIGDGTXNMNIKEI
TCGPGHGISIGSLGKFPNEEPVXGIKVSKRTITNTXNGARIKTWPGESPGXVTDIHFEDI
IVNNVSXPILIDQKYCPWSKCKINVXSKVKLSNISFKNIRGTSALXEVVKFICSGSSPCQ
NVELADIDIKHTGXEPATSQCLNVKPITSGKLNPTPCSXYIPKTLSATA
NT seq
1230 nt
NT seq
+upstream
nt +downstream
nt
atggcaccacaccttgatattgttccttccatgtttgtgcttttattattattcatttca
gcctctaaagttcaatcagacgctcttgatgttgttgccaagtttggcgcaaaagctgac
gggaaaacggatttgagtaaggcaaccattttggatgctcggaaagaagcatgcgcctca
gtaaccccatcagcagttgtgattcctaaagggacatatttattaacaaaagtaaaccta
gaaggtccatgcaaggctcctattgagattaatgttaggggcactatcnntgctctcggt
gatcctagtgttttcaaggaccctaattgggttcgattctatagtattgaaaatttcaaa
atgtctggcggaggaattttcgatggtcagggaagcattgcttatgagaagaataaagat
ccccacaatcgtgcatttcgttcgaaacttccaatgaatataaggtttgactttgtgacc
aacgcattgatacaagatataaccagcaaagacaagaagctcttccacgttaatnngttt
tgcatgcaaaacattaccctcgaacgtttcaaggtagaggcannggaagatagcccaaac
acgtatgggattcacttgggcaaatcgacggggtcaatattattatcgnntgacattaaa
actggtgatgattgtatttctatcggagatggcactnaaaatatgaacataaaagaaata
acttgtggaccgggacatggtataagtatcggtagtcttggaaagttcccaaatgaagag
ccagttngaggaattaaagtctcaaagcgcaccatcaccaatactntgaatggagctcga
atcaaaacttggccaggcgaatctccaggantagtaacagatatacattttgaggatatt
atcgtgaataatgtctctntccctatcctaattgatcaaaaatattgcccatggagtaaa
tgcaagataaatgtataatcgaaagttaaactaagcaacattagcttcaagaacatccgt
ggcacatctgcgcttncagaagtcgtcaagtttatttgcagcggttcttcgccatgtcaa
aatgtggaacttgcggacattgatattaagcacaccggangtgaacccgcaacatcccaa
tgtttgaatgtcaagcctataactagtggcaaattaaacccgactccatgttccnattac
atcccaaaaacccttagcgccaccgcttaa
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