Gossypium raimondii: 105775729
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Entry
105775729 CDS
T04129
Name
(RefSeq) serine/arginine-rich splicing factor SR45
KO
K14325
RNA-binding protein with serine-rich domain 1
Organism
gra
Gossypium raimondii
Pathway
gra03013
Nucleocytoplasmic transport
gra03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
gra00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
105775729
03015 mRNA surveillance pathway
105775729
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gra03019
]
105775729
Messenger RNA biogenesis [BR:
gra03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
105775729
SSDB
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GFIT
Motif
Pfam:
RRM_1
Nup35_RRM_2
RRM_occluded
RRM_10
Motif
Other DBs
NCBI-GeneID:
105775729
NCBI-ProteinID:
XP_012453657
UniProt:
A0A0D2R057
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All DBs
Position
1:2829196..2833711
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AA seq
432 aa
AA seq
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MAKPTRGRRSPSVSGSGSSSRSRSRSRSRSRSYSGSDSKSSSRSRSVSRSRSASPSSSRS
RSRSLSSSPSRSGSSRSRSPPQRRSATDASRRGRSPPPQSKKSSPAPRKTSPIRESLVLY
VDSLSRNVNEGHLREIFGNFGEVVNVDLAMDRALNLPRGFGYVEFKTRADAEKALLYMDG
AQIDGNVVRAKFTLPPRPKASPPPKPNPSATTKRDAPKSDNVNADTEKDGPKRPREPSPQ
RKPPPSPRRRSPVGRRGGSPRRPPESPRRRPDSPVRRRGETPPRRRPASPARGRSPLSPP
RRLRSPARTSPRRMRGSPIRRRSPPPRRRSPPRRPRSPPRRSPFNRRRSPSPIRRRSRSP
IRRPLRSRSRSISPPRGRGPAARRGRSSSYSRSPSPRKAGRRVSRSRSPRRPLRGRRSSS
KSSSSSSPPRRP
NT seq
1299 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagccgacgagaggccgccgttctccttctgtctccggctccggttcctcttcc
cgttctcgttcacggtctaggtctcgctcccgctcttattccggttcagactccaagtcc
agttctcgctctcgctcagtgtcccgctccagatctgcttccccgtctagctctcgttct
cgctccagatctttatcctcttctccttctcgtagcggtagctctcgaagtcgcagtcct
cctcagcgtcgaagtgcgactgatgcatctaggcgaggtcgttcccctcctccgcaatct
aaaaaatcatctcctgctccgaggaagacttctcccatccgtgagtctctggttctttac
gtcgactcactgagcaggaatgttaatgaaggtcatctaagagaaatattcggtaatttc
ggtgaagttgtaaatgtggatcttgcaatggaccgtgctcttaatcttccaagaggattt
ggatatgttgaattcaagacaagagcagatgctgaaaaagctctactttacatggatggt
gcccagattgatggcaatgtagtaagagcgaaattcacacttcctccacgaccaaaagct
tctccgccaccaaagccaaatccttctgctactactaaaagagatgctcccaaatctgat
aatgtcaatgctgataccgagaaggatgggccaaaacgaccacgggaaccttctcctcaa
cggaagcccccgccttcaccacgaaggagatctcctgtgggccgaagaggtggatctcct
agacgaccaccagagtctcctcgtcggcggcctgattctccggttcgtcgtcgtggtgaa
acacctcctaggcgccgacctgcctctcctgctagaggtcgttctccattgtctcctcca
aggcgacttcgatctccagcaaggacctctccgcgtaggatgcgtggcagtccaatccga
aggcgttctccacccccaaggcgccgttcacctcccagacgacctcgtagccctccaaga
aggtctcccttcaatcgtagacgtagcccttctccaattcgtaggcggagccgttctcca
attcgcaggcctcttcgttctcgttcaaggtcaatctcaccaccaagaggcagaggacct
gcagcacgacgtgggaggtcatcatcctattcccgatcacccagtccccgaaaggcagga
cgaagggtttcaaggagtcgcagtcctaggaggccattgagaggaagaagaagcagcagc
aaaagcagcagcagtagttcgcctcctcggaggccgtag
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