KEGG   Gossypium raimondii: 105776106
Entry
105776106         CDS       T04129                                 
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 8 isoform X1
  KO
K12614  ATP-dependent RNA helicase DDX6/DHH1 [EC:5.6.2.7]
Organism
gra  Gossypium raimondii
Pathway
gra03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:gra00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    105776106
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:gra03019]
    105776106
   03036 Chromosome and associated proteins [BR:gra03036]
    105776106
Enzymes [BR:gra01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     105776106
Messenger RNA biogenesis [BR:gra03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     105776106
  mRNA degradation factors
   5'-3' decay
    Decapping complex
     105776106
Chromosome and associated proteins [BR:gra03036]
 Eukaryotic type
  Gene silencing
   piRNA pathway
    105776106
SSDB
Motif
Pfam: DEAD TFIIA DUF863
Other DBs
NCBI-GeneID: 105776106
NCBI-ProteinID: XP_012454042
UniProt: A0A0D2T2X8
LinkDB
Position
10:4172773..4175929
AA seq 209 aa
MNNRGRYPSVLGRGGGANANPSFQSRPEQPQYAQRNLVQNHHHFQQQQHHHHHLQQQQHQ
QQWLRRNQLPGGNDSTVVDEVEKTVQSEAGDSSSQDWKARLKMPPSDTRYKTEDVTATKG
NEFEDYFLKRELLMGIYEKGFERPSPIQEERIPIALTGSDILARAKNGTGKTAAFCIPAL
EKIDQDNNVIQGAMPRDVFNTLPPFSCGL
NT seq 630 nt   +upstreamnt  +downstreamnt
atgaataatagagggaggtatccatcggtgctcggccgtggcggcggagcgaacgcgaac
cctagctttcaatcgaggccggagcaaccgcagtatgcgcagagaaatttggtgcagaat
catcatcattttcaacaacagcaacatcatcatcatcatctgcaacagcaacaacatcaa
cagcagtggctcagacgaaaccaattgcccggcggaaatgactccactgtcgtcgatgag
gtcgagaagaccgtacaatctgaagccggcgactcaagttcacaagattggaaggcaagg
ctaaagatgccaccatcagatacacgctacaaaacggaggatgtgactgctaccaaagga
aatgaatttgaagactactttctgaaacgtgaacttcttatgggaatatatgagaagggc
tttgaaagaccatctcctattcaggaagagagaattcccattgctttaactggaagtgat
attcttgctagagccaaaaatggaactgggaaaactgcagcattttgcattcctgcattg
gaaaaaattgaccaagataacaatgttattcaaggtgcaatgccgagggatgttttcaac
acactaccaccgtttagctgtggactatag

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