Gossypium raimondii: 105776218
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Entry
105776218 CDS
T04129
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 42
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
gra
Gossypium raimondii
Pathway
gra03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
gra00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
105776218
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
gra03041
]
105776218
Enzymes [BR:
gra01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
105776218
Spliceosome [BR:
gra03041
]
Complex A
U2 snRNP components
U2 related factors
105776218
Complex B
105776218
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
KH_12
ResIII
Tet_JBP
Motif
Other DBs
NCBI-GeneID:
105776218
NCBI-ProteinID:
XP_012454212
UniProt:
A0A0D2TDX4
LinkDB
All DBs
Position
10:58770810..58776059
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AA seq
1104 aa
AA seq
DB search
MEDSEKRRHRERRDRDRDRDRERRRSEREKSSDSDREKEREKEKHRDRGRERKDREREKE
KERERAREKEREREKREREREREREREKREREREREREKEREREKKAREKEKRREYNSDD
SKEEKERHRKRRRRERDDEDDCNDDYKERESKSNRGESPARKKSGEDELEKKGKKSREEE
MEDEQRKLDEEMEKRRRRVQEWQELRRKKEEMEREKRGEGNAVEEEEAKVGKAWTLEGES
DDDEAASSMNAEMSMEVDDNENAKPDGKVTGDAMHDGGNSEDGKDKMVVDQNGDNGVAEN
DDEIDPLDAFMNSMVLPEVEKLSNAVVDPPPSDSNGNLKTDKKDGLSNGGQEQPKKGSNK
ALGRIIPGEDSDSDYGDVENDEENLEDEDDDEFMKRVKKTKAEKLSIVDHSKIDYKPFRK
NFYIEVKEISRMIPEEVSAYRKELELKLHGKDVPKPIKTWHQTGLTSKILETIRKLNYEK
PMPIQAQALPVIMSGRDCIGIAKTGSGKTLAFVLPMLRHIKDQPPVVAGDGPIGLIMAPT
RELVQQIHSDIKKFTKVMGIRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSG
GKISNLRRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKV
LNKPVEIQVGGRSVVNKDITQLVEMRPESERFLRLLELLGEWYEKGKILIFVHSQEKCDA
LFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINF
DVPNHYEDYVHRVGRTGRAGRKGCAITFISEDDARYAPDLVKALELSEQVVPDDLKALAD
GFMAKVNQGLEQAHGTGYGGSGFKFNEEEDEKRKAAKKAQAKEYGFEEDKSDSEDEDEGV
RKAGGDISQQTALAQIAAMAAASKASTALMQNPLSSGQLLPNAVLPISLPGVHGVSMPGT
AAVVPGSGLSGLPNEEAARKAALQAALNLQHNLAKIQADVMPEHYEAELEINEFPQNARW
KVTHKETLGPISEWTGAAITTRGQYFPPGRIPGPGERKLYLFIEGPTELSVKRAKAELKR
VLEDISHQSLQLPGGTQPGRYQVL
NT seq
3315 nt
NT seq
+upstream
nt +downstream
nt
atggaagattcagaaaagagaaggcaccgtgagagaagagatagggatagggatagggat
cgagaacggcgtcgttccgagagagagaagagcagcgattccgatagagaaaaggagagg
gaaaaagaaaagcatcgagataggggaagggaaaggaaagatagggaacgagagaaggaa
aaggagagggaaagagctagggagaaggaaagggaaagggaaaagcgtgaaagggaaagg
gaaagggaaagagaaagggagaagagggaaagagaaagagaaagggaaagggaaaaagag
agggagagggaaaagaaggcgagggaaaaggagaagaggagggaatataatagtgatgat
agcaaggaggagaaggaacgacataggaagcggcgaaggagggaacgcgatgacgaagat
gactgtaacgatgattataaggagagggagagtaaatcgaataggggagagagtcctgct
aggaaaaagagtggtgaagatgagttggagaagaaagggaagaaaagtagggaagaggaa
atggaagatgagcagcgtaaattggatgaggagatggagaaaaggaggaggagggttcaa
gaatggcaggagttgaggaggaagaaggaagaaatggagagggagaaacgtggggaaggg
aatgcggttgaagaggaggaggctaaggttggtaaagcttggacccttgaaggggaatca
gatgatgatgaagcggcttcttctatgaatgcggagatgagtatggaggtcgatgataat
gagaatgctaagcctgatggtaaggtaactggagatgcaatgcatgacggtgggaattct
gaggatggaaaagataaaatggttgttgaccaaaatggggataatggggttgctgagaat
gatgatgaaattgacccattagatgcttttatgaattcaatggtgctacctgaagttgag
aagctaagtaatgcagttgttgatcctcctcctagtgatagcaatgggaacctgaagact
gataaaaaagatggcttgagtaatggtggacaggagcagccaaagaaaggttcgaacaag
gcacttgggagaatcattcccggcgaagattcggattcggattacggggatgttgagaat
gacgaagagaatttagaagatgaagacgatgatgagttcatgaaaagggtaaagaagaca
aaagctgaaaaactatcgattgtagaccattcaaagatcgattataaaccattcaggaaa
aatttctatattgaagttaaggagatatctagaatgatacctgaggaagtgtctgcttat
aggaaggaattggaattgaagttacatggaaaggatgtgccgaaaccaatcaaaacctgg
catcaaactggactaacaagtaaaatattagagacaataaggaagctaaattatgagaag
ccaatgccaattcaagctcaggcactgcctgtaatcatgagtggtcgagactgcattggt
atagcaaaaactggctctggtaaaacccttgcttttgtgttacctatgttaaggcatatt
aaagatcagccacctgtagtagctggagatgggcctattggactcattatggcacccaca
agggagcttgtacagcagattcatagtgacataaagaagtttaccaaggtaatgggaatc
agatgtgttcctgtgtatggaggttctggtgttgcccagcagattagtgaattaaaaagg
ggaacagagattgttgtatgtactccaggtaggatgattgatatactttgtaccagtggg
ggaaaaattagtaatcttcgtagagtgacatacttggttctggatgaagctgacagaatg
tttgatatgggttttgaacctcaaattactcgaattgttcaaaatattcgacctgatcgc
caaactgtactattttctgctactttccctcgccaggttgagattttggcacggaaagtg
ttgaataaacctgttgaaatacaggttggtgggagaagtgttgtgaacaaggacataacc
cagttggttgagatgaggccagaaagtgaaaggttcctaagattgttagaacttctaggt
gaatggtatgagaaggggaaaattctgatttttgtccacagtcaagaaaagtgtgatgct
ttgttcagggatttgctcaaacatggttacccttgcctgtcacttcatggggccaaggat
cagactgatcgggagtccaccatttctgattttaagagcaatgtttgcaatttgttgatt
gcaacaagtgttgcagctaggggtttagatgtaaaggagcttgaattagtgattaacttt
gatgtaccaaatcattatgaagattatgttcaccgtgttggtaggactggtagagctggg
cggaaaggctgtgctatcacatttatctctgaggatgatgcaagatatgcaccggatctc
gtaaaagctttagaactctctgagcaagttgttcctgatgacctgaaagctctcgcagat
ggctttatggcaaaagtcaatcagggacttgagcaggctcatggaacaggttatggtgga
agtggttttaaattcaatgaagaggaggatgaaaagagaaaagcagcaaagaaagcacaa
gcaaaagaatatgggtttgaggaagacaagtcagactcggaagatgaagatgaaggggtg
cggaaggcaggtggtgacatctcacagcagacagcacttgctcagatagctgccatggct
gctgcctccaaagctagtactgctttgatgcagaatcctctatcatctggccaactgctt
cccaatgctgtattgcctatttctcttcctggtgtacatggtgtctcaatgcctgggact
gcagcagttgttcctggtagtgggctgtctggtcttccaaatgaagaggctgctcgaaaa
gctgcactgcaagctgctctcaatttacagcataacctagcaaagattcaagctgatgtt
atgcctgaacattatgaagctgagttggagatcaatgaattcccacaaaatgctcgatgg
aaggttacccacaaggaaactttgggcccaatatcggaatggactggagctgccattact
acgaggggccagtatttcccacctggtcggatcccaggaccaggagaacgcaagctttac
ttgttcattgaaggacctactgagttatctgttaagagagctaaggcagaactgaaacgt
gtgctggaagacatctcacaccagtccttacaacttcctggtgggactcaacccggcaga
taccaagttttgtag
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integrated database retrieval system
