Gossypium raimondii: 105776488
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Entry
105776488 CDS
T04129
Name
(RefSeq) transcription elongation factor SPT6 homolog
KO
K11292
transcription elongation factor SPT6
Organism
gra
Gossypium raimondii
Brite
KEGG Orthology (KO) [BR:
gra00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gra03021
]
105776488
03036 Chromosome and associated proteins [BR:
gra03036
]
105776488
Transcription machinery [BR:
gra03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
105776488
Chromosome and associated proteins [BR:
gra03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
Other Histone chaperones and regulators
105776488
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SH2_2
HHH_7
YqgF
SPT6_acidic
Spt6_S1
Tex_central_region
HTH_44
HHH_9
SH2
HHH_3
Motif
Other DBs
NCBI-GeneID:
105776488
NCBI-ProteinID:
XP_012454612
UniProt:
A0A0D2VQA4
LinkDB
All DBs
Position
10:complement(52916018..52924777)
Genome browser
AA seq
1582 aa
AA seq
DB search
MGRNVISDEEDELEVDEEGEPMEGDNINDRDPDDEDEEDEDGQDEYENDGFIVDDVEDED
VDEDEEREDSDEERRKKKKKRKKKEAEDLDEDDYELLRENDVNVPKGSKKFKRLKKARRD
FDEEQFGLSDDEFDGGMKGSATAEEKLKRTLFGDDDGQPLEDIAEDEEPIEEEEDGDMGE
EDEMADFIVEEDEEHGASVRRKKMKNKKSRHAPDVSSSALKEAIDIFGDVDELLLLRKQG
LDSSEQKEGRLEDQFEPTVLSEKYMTEKDDQIRMTDVPERMQISEESTGTPPIDELSIIE
ESTWIFNQLINGAVPLFGKERQDHFINKDDIMRFLDLTHVQKLDIPFIAMYRKEQCLTLL
QDPEQHDVDDDQDKSEKAPTMKWHRVLWAIQDLDRKWLLLQKRKSGLQLHYNKRFEEESR
RIYDETRLNLNQQLFESILKDLRGAESEREVDDVDAKFNLHFPPGEVGVDEGQYKRPKRR
SQYSICNKAGLWEVASKFGYSAEQLGAHLSLEKMDDELEDAKETPEEIASNFTCAMFETP
QAVLKGARHMAAVEISCEPSVKRCVRNIFMDNAVVSTSPTPDGKIAIDSFHQFAGVKWLR
EKPLTRFDDAQWLLIQKAEEEKLLQVTIKLPEKFLNKLIKECNDQYLSNGVSKSAQQWNE
QRKLILHDALFGFLLPSMEKEARSLLASRAKNRLLLEYGKDLWNKVSVGPYQKKESDVSS
DEETAPRVMACCWGPGKPATTFVMLDSSGEVLDVLYTAALTLRSQNVHDQQRKKNDQQRV
LKFMTDHQPHVVVLGAVNLSCTRLKDDIYEIIFKMVEENPRDVGHEMDELSIVYGDESLP
RLYENSRISTDQLPGQSGIVRRAVALGRYLQNPLAMVATLCGPGKEILSWKLNPMENFLT
ADEKYGMIEQVLVDVTNQVGLDANLAASHEWLFAPLQFISGLGPRKAASLQRSLVRVGTI
FTRKDFLSAHGLDKKVFVNAVAFLRVRRSGLAANSSQFIDLLDDTRIHPESYLVAQELAK
DVYDEDLKGDNDDEDALEMAIEHVRDRPGLLKRLRLDNYLKSKDRQNKRETFYDIRRELI
QGFQDWRKPYKEPSQDEEFFMISGETEDTLAEGRIVQATVRRVQGGRAICALESGLTGII
MKEDYADDWRDIIELSDRLHEGDILTCKIKSIQKNRYQVFLVCKDSEMRSNRHQHVQNLD
PYYHEERSSIQSEQEKARKEKELAKKHFKPRMIVHPRFQNITADEAVEYLCDKEPGESIV
RPSSRGPSYLTLTLKVYDGVYAHKEIVEGGKEHKDITSLLRIGKTLKIGEDTFEDLDEVM
DRYVDPLVSHLKAMLSYRKFRKGTKSEVDKLLTIERQEYPMRIVYCFGISHEHPGTFILT
YIRSTNPHHEYVGLYPKGFKFRKRMFEDIDRLVAYFQRHIDDPQNESAPSIRSVAAMVPM
RSPAAGSSAGASTGSGWGGPTNEGSWRGQSFDRGQSSTPGSRTGRNDYRNSSSRDGHPSG
AARPYGGRGRGRGSYNSSRGHNEGQDSSYNGTPKRDSGNKRGEDGLGNFPGAKVQNSPGR
EAFPGGWGGSAGTQSGSGSGWQ
NT seq
4749 nt
NT seq
+upstream
nt +downstream
nt
atgggaagaaacgtcatctctgatgaagaagatgagttggaggtcgacgaggaaggagag
ccgatggaaggggacaatatcaatgaccgcgaccctgatgacgaggatgaagaagacgag
gatgggcaggatgagtatgagaatgatggatttatagttgatgatgtggaggatgaagat
gtagatgaagatgaagagagggaagatagtgacgaagagaggcggaagaaaaagaaaaaa
agaaagaagaaggaagctgaggaccttgatgaagatgactatgagcttctacgggagaat
gatgttaatgtaccgaagggaagcaagaaatttaagcggttaaaaaaggctcggagagat
tttgatgaggagcaatttggactttctgatgatgagtttgatggaggcatgaagggtagc
gcaactgctgaggaaaagcttaagcgtactctatttggtgatgatgatggacaacctctt
gaagatattgctgaagatgaagagccaatagaagaggaagaggatggagatatgggtgaa
gaagatgaaatggcagactttattgtagaagaagatgaggagcatggagcttctgttaga
cggaagaagatgaagaataagaagtcaaggcatgcaccggatgtttcatcatctgcttta
aaggaagctatagatatctttggtgatgtggatgaactcctgctgttacgcaaacagggc
ttagattctagtgagcagaaagaagggcgacttgaagatcaatttgaaccaactgttctt
tctgaaaagtacatgaccgaaaaggatgaccaaattcggatgactgatgttccagaaaga
atgcagatctcagaggaaagcaccgggactcctccaatagatgaactcagcataattgaa
gagagcacctggatatttaaccaacttataaatggtgcagtaccattatttggtaaagaa
aggcaggatcattttataaacaaggatgacattatgagatttttggatttaactcatgta
cagaagttagatattccctttattgcgatgtatcgcaaggagcagtgtcttactctgctt
caagatcctgagcaacatgatgttgatgatgatcaggataaatctgaaaaagcacctaca
atgaagtggcacagggtgctttgggcaattcaggaccttgaccgaaaatggctgcttctt
caaaagagaaagagtggtcttcagttgcactacaataagcggtttgaagaagaatcacga
cgcatatatgatgaaacaagacttaatttgaaccaacagctttttgaatcaattcttaaa
gatctcaggggcgcagagtcagaaagggaagttgacgatgttgatgccaagtttaacttg
catttcccacctggggaggttggtgttgatgaaggtcaatataagaggcccaagaggaga
tcacaatatagtatttgcaataaggctggcctgtgggaggttgccagcaagtttggatac
agtgctgagcaacttggagcacatctatctctggaaaagatggatgatgagttggaagat
gcaaaggagacaccagaggagatagcttcaaattttacatgtgcaatgtttgagactcca
caagctgtccttaaaggagccaggcatatggctgcggttgagataagctgtgagccgtct
gtcaagagatgtgttcggaatatctttatggataatgctgtagtatcaaccagccctacc
cctgatggaaaaatagcaattgattctttccatcagtttgctggtgtgaaatggttgcgt
gaaaaacctttgaccagatttgatgatgcacaatggctccttatccagaaggctgaagag
gagaagcttcttcaagtaactattaagctgccagaaaagtttcttaataagttgattaaa
gaatgtaatgaccaatatcttagtaatggtgttagcaaatctgctcaacaatggaatgag
cagagaaagctaatactgcatgatgctctttttggttttcttttaccctcaatggagaaa
gaagcaaggtccttgttggcaagtagagctaagaaccggttacttttggaatatggcaag
gacttgtggaataaggtttctgtggggccttatcaaaagaaagaaagtgatgttagttct
gatgaggaaactgcaccacgggtcatggcctgctgttggggccctgggaagcctgcaacc
acttttgtgatgttggattcatctggggaggtgcttgatgtgctttatactgctgctctt
acattacggtctcaaaatgtacatgatcagcaacgcaagaaaaatgatcagcaacgtgtt
ttgaagttcatgaccgatcatcaaccacacgtcgttgttcttggagctgtgaatttgtct
tgtactcgattgaaggatgatatctatgagattatttttaagatggtggaggaaaatcct
agggatgttgggcatgaaatggatgagctgagcatagtatatggggatgaatctctaccc
cgtctctatgaaaattctaggatttcaacagatcagctccctggccagtcaggcattgtt
aggcgggctgttgcccttgggcgttatcttcaaaatccattagcgatggttgccacattg
tgtggcccagggaaggagatactctcttggaagcttaatccaatggagaacttcctcacg
gcagatgagaagtatggcatgattgaacaggttttggttgatgtcacaaatcaggtgggc
cttgatgctaatttggctgcaagtcatgaatggttgtttgctcctttgcaattcatttct
ggtcttggacctagaaaggcggcatcactgcagagatcattggtcagagttggaacaatt
tttactaggaaagactttttgtcagcccatggacttgataagaaggtgtttgttaatgcg
gtagcctttctgcgcgtcagacggagtgggcttgctgccaacagcagccagttcattgat
ttgttggatgacactagaatacatccagaatcttatcttgttgcccaagagttggccaaa
gatgtttatgatgaggatcttaagggtgacaatgacgatgaggatgcattggagatggca
atagaacatgttagggaccggcctggtttgttgaaaaggcttcgtcttgataactatcta
aaaagcaaggatcgacaaaataagagggagaccttttatgatataaggagggaattaatt
cagggcttccaggattggcgtaaaccgtataaggagccaagtcaggatgaggagttcttt
atgatttcaggtgaaactgaggataccctggcagaaggccgaattgtgcaagctacagtt
agaagagtgcaaggcggaagagctatatgtgcacttgaatctggattgactgggattatt
atgaaagaagactatgcagatgattggagagatataattgagttatctgataggctgcat
gaaggtgacatcttgacctgcaagattaaatcaattcaaaagaatagatatcaagtgttc
ctggtttgcaaagatagtgagatgagaagcaatcgacaccagcatgtccagaacctagat
ccttactaccatgaggagcgaagcagcattcaaagtgagcaagagaaagctcgtaaagag
aaggagctggcaaagaagcattttaagcccaggatgattgtccatccacgcttccaaaat
attactgctgatgaagctgtggagtatttatgcgacaaggagcctggagaaagtatagtc
cgtcccagttctcgtggaccttcttatctgactttaactctcaaagtctatgatggggtt
tacgcccataaagaaatagttgaaggtggtaaagagcacaaggacatcaccagcctgctt
cgcattgggaagacattgaaaattggggaagacactttcgaggatttggatgaggtaatg
gatcgatatgttgatccccttgtgtctcatctgaaggcaatgctgagttatcgtaaattc
aggaagggaactaaatcagaggttgataagcttctaacaatcgagagacaagagtatcct
atgaggattgtctattgttttggcatttctcatgaacatccaggcactttcattcttact
tatatacgaagtacgaatccgcatcatgagtatgttggtttatatcccaagggattcaag
ttcagaaaaaggatgtttgaggatattgatcgtctagttgcatatttccagaggcatatc
gatgatccacagaatgagtcagctccatcaataagatcagttgcagcaatggtaccaatg
cggagccctgctgctggatcctctgctggggcatctaccggtagtggttggggtggtcca
accaatgaaggcagttggagaggccaatctttcgacagggggcaatcttccactccaggg
tcaagaactggccgaaacgattacagaaatagcagtagtcgagatgggcatccaagtggt
gcagcacggccctatggtggacggggacgtggtaggggttcatataacagcagcagagga
cataatgaggggcaggattcatcatacaatggaactccgaaacgggattcaggtaacaaa
agaggggaagatggtttgggtaatttccccggtgctaaagttcaaaactctccaggtagg
gaagctttccctggtggttggggtggcagtgccggaacccaaagtggcagtggcagtggt
tggcaatga
DBGET
integrated database retrieval system
