Gossypium raimondii: 105776696
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Entry
105776696 CDS
T04129
Name
(RefSeq) spliceosome-associated protein 130 A
KO
K12830
splicing factor 3B subunit 3
Organism
gra
Gossypium raimondii
Pathway
gra03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
gra00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
105776696
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gra03021
]
105776696
03041 Spliceosome [BR:
gra03041
]
105776696
03036 Chromosome and associated proteins [BR:
gra03036
]
105776696
Transcription machinery [BR:
gra03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
105776696
Spliceosome [BR:
gra03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
105776696
Complex B
105776696
Complex C
U2 SnRNP specific factors
105776696
Chromosome and associated proteins [BR:
gra03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
105776696
TFTC complex
105776696
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_1st
Beta-prop_RSE1_2nd
CPSF_A
Beta-prop_EML_2
Beta-prop_BBS7
WDR55
Motif
Other DBs
NCBI-GeneID:
105776696
NCBI-ProteinID:
XP_012454998
UniProt:
A0A0D2UXQ2
LinkDB
All DBs
Position
10:complement(56780294..56784908)
Genome browser
AA seq
1214 aa
AA seq
DB search
MYLYNLTLQQATGIVSAINGNFSGGKIQEIVVARGKILSLLRPDDLGKLQTLHSVEIFGC
IRSLAQFRLTGAQKDYIVVGSDSGRIVILEYNKEKNVFDKVHQETFGKSGCRRIVPGQYL
AIDPKGRAVMIGACEKQKLVYVLNRDTAARLTISSPLEAHKSHTIVYSICGVDCGFDNPI
FAAIELDYSEADQDSTGVAAGEAQKHLTFYELDLGLNHVSRKWSEQVDNGANMLVTVPGG
GDGPSGVLVCAENFVIYKNQGHPDVRAVIPRRADLPEERGVLIVSAATHKQKSMFFFLLQ
TEYGDIFKVTLEHGNEGVSELKIKYFDTIPVTSSMCVLKTGFLFAASEFGNHALYQFQAI
GDDPDVESSSSTLMETEEGFQPVFFQPRGLKNLVRIDQAESLMPIMDMKIANLFEEETPQ
IFSLCGRGPRSSLRILRPGLAISEMAVSQLPGVPSAVWTVKKNVNDAFDAYIVVSFANAT
LVLSIGETVEEVSDSGFLDTTPSLAVSLIGDDSLMQVHPNGIRHIREDGRINEWRTPGKR
TIVKVGSNGLQVVIALSGGELIYFEVDMTGQLMEVEKHEMSGDVACLDIAPVPEGRQRSR
FLAVGSYDNTIRILSLDPDDCMQVLSVQSVSSPPESLLFLEVKASVGGEDGADHPANLFL
NAGLQNGVLFRTVVDMVTGQLSDSRSRFLGLRAPKLFSVKVRGRPAMLCLSSRPWLGYIH
QGHFLLTPLSYETLEFAASFSSDQCAEGVVAVAGDALRVFTIERLGETFNETAIPLRYTP
RRFVLQPKRKLLVIIESDQGSYTAEEREAARKECFEAAGMGENGNGNMNQMENGGDDEDK
EDPLSDEQYGYPKAESNKWVSCIRVLDPRTASTTCLLELQDNEAAFSVCTVNFHDKEYGT
LLAVGTAKGLQFWPKRSLTAGFIHIYRFLEDGRSLELLHKTQVEGVPLALCQFQGRLLAG
IGSVLRLYDLGKRRLLRKCENKLFPNTIISIQTYRDRIYVGDIQESFHFCKYRRDENQLY
IFADDVVPRWLTASYHIDFDTMAGADKFGNVYFVRLPQDVSDEIEEDPTGGKIKWEQGRL
NGAPNKVEEIVQFHVGDVVTSLQKASLIPGGGECVLYGTVMGSLGALLPFTSRDDVDFFS
HLEMHMRQEHPPLCGRDHMAYRSAYFPVKDVIDGDLCEQFPTLPLDLQRKIADELDRTPG
EILKKLEEARNKII
NT seq
3645 nt
NT seq
+upstream
nt +downstream
nt
atgtatctctacaatttaactcttcaacaagccaccggcatcgtttccgccataaatgga
aacttctccggcggtaaaatccaagaaattgtcgtcgcccgtggtaagatcctttccctt
ctccgccccgacgatctcggtaagctccaaacgcttcattccgtcgaaattttcggttgc
atacgttccctagctcagttccggctaactggagctcaaaaggactacattgttgtaggg
tccgattcgggtcggatcgttatacttgaatacaataaagagaagaacgtctttgataaa
gttcaccaagaaacttttgggaaatctgggtgtcgccggattgttccgggtcaatacttg
gctattgacccgaaaggaagagctgtaatgattggtgcttgtgagaagcagaaattagtt
tatgttttgaatagagatactgctgctaggttaaccatttcttcacctttagaagctcat
aaatcacatacgattgtttactctatttgtggtgttgattgtggtttcgataaccctatt
tttgctgccatcgagttggattactcggaggctgatcaggattccacgggagtggctgca
ggtgaagcacagaagcatttgacgttttatgaacttgatttagggcttaaccatgtgtct
cggaagtggtcggaacaggttgacaatggggcaaatatgttggtcacagtgcctggtggt
ggtgatgggccaagtggggttctggtttgcgcagaaaattttgttatctataagaatcag
gggcatcctgatgttagagcggtgattcctagacgggctgacttgccagaagaacgtggt
gttttgattgtttcagcggctacgcataagcagaagtcgatgtttttctttcttttgcag
acagaatatggagatatttttaaggttacattggaacatggaaatgaaggagtttcggaa
ttgaagattaagtattttgatacaattccggttacgtcttcaatgtgtgtgttgaaaact
ggttttctatttgcagcttcagagtttggcaatcatgctttgtatcagtttcaggctatt
ggggatgaccctgatgtggaatcatcatcatctacattgatggaaacagaagaaggtttt
cagccagtgtttttccagccgagagggcttaagaatctagttaggattgaccaagctgag
agcctgatgccaataatggacatgaaaattgctaatctcttcgaggaagaaacacctcag
atattttcactttgtggacgtggtcctcgttcatcattgaggatactaaggcctggtttg
gccatcagtgagatggctgtttcacagcttcctggtgtcccaagtgctgtgtggactgtg
aagaaaaatgttaatgatgcctttgatgcatacattgtcgtgtcatttgccaatgcaaca
cttgttctttccattggtgaaacagttgaagaagttagcgatagtgggtttcttgatact
acgccctctcttgctgtttctttaattggtgatgattcactgatgcaagttcacccaaat
ggtattaggcatataagggaagatggacgtattaatgagtggagaacacctgggaaaagg
acgattgttaaagttggttcaaatgggcttcaagtagttattgcattgagtggaggtgag
cttatatactttgaggtggatatgactgggcaacttatggaagttgagaagcatgaaatg
tctggagatgtggcgtgtctggacattgcccctgttcctgaaggaagacagaggtcccgt
ttccttgcggttggttcctatgataatacaatccgtatattatctttggatcctgatgat
tgtatgcaggttctgagtgttcagagtgtgtcctcacctcctgagtctctccttttcctt
gaagttaaggcatcggtaggtggtgaggatggtgctgatcaccctgccaatcttttcctt
aatgctggtctgcagaatggagttctgtttcggacggtagtggatatggttacggggcaa
ctttctgattcccgttcacgtttcttaggcctaagagcccccaagttgttctctgttaaa
gtaagaggccgacctgcaatgctttgcttgtctagtcgaccatggcttggttatattcac
caaggacattttctgttaacacccctttcttacgagacacttgaatttgctgcctcattt
tcatctgatcagtgtgccgaaggtgtcgttgctgttgcaggggatgcattgagagttttc
accattgagcgacttggagaaaccttcaatgagaccgctattcctttgaggtatactcct
aggaggtttgttttgcaaccaaagcggaaattgttggtaattattgagagtgaccaagga
tcatatactgcagaagagcgtgaagctgcaagaaaggagtgctttgaggctgcaggaatg
ggagaaaatggtaacggcaatatgaaccaaatggaaaatggtggtgatgatgaggacaaa
gaggatcccctctctgatgagcagtatggttatcctaaggcagagtcaaacaagtgggtt
tcttgcattagagttcttgatccgaggactgcttccacaacttgtcttttggagcttcag
gacaatgaagctgctttcagtgtgtgtactgtgaatttccatgataaagagtatggaact
ctgttggctgttggcacggccaagggtctgcagttttggcccaaaagaagcttaactgcg
ggattcattcatatctataggtttttagaagatggcagatcgcttgaacttctgcacaag
acacaagtggaaggtgttcctcttgctttatgccaatttcagggaagattacttgctggg
ataggatcggtgctccgattatatgacctggggaaaaggagactgcttaggaaatgtgag
aataagcttttccctaacactattatctctatccaaacttatcgtgatagaatatatgtt
ggggacatccaagagtcattccatttttgcaagtataggagggatgaaaatcaactgtat
atattcgctgatgatgttgttccgagatggcttactgcatcataccatatagattttgac
accatggctggtgcagacaagttcgggaatgtctattttgtgcggctaccacaagatgtc
tcagatgaaatagaggaagacccaactggtggaaagataaaatgggaacaagggaggctc
aatggagctcctaacaaggtagaggagatagttcagttccatgtcggggatgtggtaact
agtttgcagaaggcatctcttataccaggtggtggagagtgtgttctttatggaactgta
atggggagcttgggggcattgcttccgttcacttcccgtgatgatgttgacttcttttcg
cacctagagatgcatatgaggcaggaacaccctcccttgtgcggacgagatcatatggct
tacagatctgcttatttccctgtcaaggatgtgattgatggggatttgtgtgagcagttt
ccgaccctacctttggatctgcagagaaaaattgcagacgagttggaccgtactcctggg
gagatactgaagaaactcgaagaagcccgaaacaagatcatttga
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