Gossypium raimondii: 105776711
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Entry
105776711 CDS
T04129
Name
(RefSeq) uncharacterized protein LOC105776711
KO
K14772
U3 small nucleolar RNA-associated protein 20
Organism
gra
Gossypium raimondii
Brite
KEGG Orthology (KO) [BR:
gra00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
gra03009
]
105776711
Ribosome biogenesis [BR:
gra03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
105776711
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UTP20_N
UTP20
UTP20_C
AAR2
XMAP215_CLASP_TOG
Motif
Other DBs
NCBI-GeneID:
105776711
NCBI-ProteinID:
XP_012455020
LinkDB
All DBs
Position
10:complement(26203417..26224061)
Genome browser
AA seq
2724 aa
AA seq
DB search
MATPSHAQAVKSLNKSEGRRRFVFKTFSQRIDDIDINVFRSLEKIKSEPSQGSTFLCDCL
IEWRELNTAEDFISFYVETMPLVQTLPSVLLHKDLIFDKLISRLQMKARLSLEPILRLLA
AFSRDLLKDFLSFLPRIVDSLVSLLKSGADREPDILEQIFTSWSYIMMYLQKYLIRDVIH
VLKVTVRLRYYPKDHVQEFMAEATSFLLRNAPVEQLIKGIRKTMFEVVKKPLPIRKSGVS
ALLCYIMLGTSSRFHSGAQRVLRLLVDNSIFAIGDKFPEGSDAILEVVITSFQKLTEELE
AKELNLMWECLYQEISETLAHGSCLHLSRLLSLLISSLQVNSGRGILDYRRMLEVVESLV
LKVVLPSSKGNGSLSDVVDKVLQLVLHILDGLHGSNNLSTISGCLLQWAPIFELRNTSLL
TFLRELLLRDPCVIYFFKDYALSAMNDLVESSQEEVLYLLLSFFERLQLHPQSTKFLDEM
SEGRLSKICDYMQGVISNWIKLINDITIGNPLTAQIDEVKLAILWGIISCYPYVFDVQAS
ESALIELIDALQRLLMIEDESIAGVSKHTWESLVGAALGSRNKWHNVKKVGFGEISKVLD
LAKACKSSSQVLFAVADYLDNVNGPAVQADSRKETYHPLLKGENMVDAVGIFAYSLCHPD
KGIRLPSLRILCHYEPLNCETSAKDQHAEKKMKTEVSQAGIIDTDESNVLQLLMSIEATP
LSISTSRKVTLLISKIQTGLSAGRIPKTYVPLVLNGIIGIFHNRFSYLWDAASECLAVLI
SNHTGLVWDKFISYFDRFQSLIQAPDVQHDRDNGNLSDSSSDLVRRFDLFVNPASDNTPG
TAVLSLLLQSLQKIPSVAESRSRQIIPLFLRFLGYDSDNLVSPGSFNSDIYEGKEWKGIL
KEWLGLLKLMRNPRAFYRSQFLKDVLQSRLLDDNDSDIQARVLDCLLSWKDDFLLPYDQH
LKNLINSKYLREELTTWSLSKEAGLIEEGHRVHLVPLVVRLLIPKIRNLKTLAPRKNASV
HLRKAVLGFIAQLDSNELHLFFALLLKPLQIIPNEDGYASNLFSNPIDEFHSLNFLKYFT
VENITALSWKKRYGFLHVIEDVMGVFDEFRVRPFLDLLMGCVVRVLASCSSNIDTAKVAE
SSPVSDHPDAEMISDDKDSAEANHVKIGTGMKQFKDLRSLCLKIVSLVLNKYEDHDFGTE
FWDLFFTSLKPLIYAFKQEGSSSEKPSSLFSCFLAMSRSLQLVSLLCRERNLVPDIFSIL
TVPTASEAIVSCVLKFISNLLDLDCELDYENCPIKSLICPNLEALVCSLHHLFQSDKASK
RKLVRCPGETEIRIFKLLLKYIRNPLLAKKFVDILLPFLSKRVQGSDICLEAIQVIQDII
PVLGNERTPEILNAVAPLLVYAKLDIRVLICNLLEALARTNSSVLVVARHVRQLNATSAF
ELDELDYDTIGQAYEGIGIGFFHSVPVEHALLILSQTVYDMSSDELILRHYAYRLLLTFL
DFSGKILGQEVTDHHETAEEIMKVDEGCWTRACVQCIINKFLLKHMGDAISRGTSVRKEW
IDLLREMVIKLPQLENLNFFRALCSEDADQDFFNNIIHLQKHKRAKALSRFADVINKTYM
SMDIINKVFLPLFFNMLFDLQHGKDEHIRTACMQALASVSAKMEWKSYYALLLRCFSEMK
KNPDKRKVLLRLICFILDRFDYSKFCSSQEAINSVDNILGSETNSIVSSAMQKGGSSIMV
SEIQTSLQKTVLPKIQKLLSSDSDNVNVSISLAALKLLKLLPGDVMESQLSSIIHRISNF
LKNRLESIRDEARSALAECLKVLGLEYLQFIIRVLRATLKRGFELHVLGYTLNFLLSKTL
SSSSDGSLDYCLEDLLGVVENDILGDVAEEKEVDKIASKMKETRKCKSFETLKLIAQSIT
FKIHALKLLSPITSHLQKHLTPKVKSKLENMLKHIADGIECNQSVNQTDLFIFVYGLITD
ATNDENGSGVSSIGTEANKHANVVSEKIVSPDRAFKTKSACSHLITTFALGVLQNRIKSM
KLDRNDEQLLSMLDPFVQLLGNCLSSKYEDILSACLRCLTPLVRLPLPSLESQADKLKVT
LLGIAQGSVNAGNPLMESCLKLLTVLLRSTKITLSSDQLHMLVQFPVFVDLERNPSFVAL
SLLKAIVNRKLVVHEIYDIVVQVAELMVTSQVEPIRKKCSQILLQFLLDYHLSEKRLQQH
LDFLLANLRYQHPTGRESVLEMLHTIMIKFPKAIVDEQSQTIFVHLVVCLANDQDNKVRS
MTGAVIKLLIGCISQHSLNSILEYSLSWYLGEKQQLWSAGAQVLGLVVEVMKKNFQRHIS
SILPVTKRILHSAIDAFTNMQMDLPDEAAIPFWKESYYSLIMLEKMLHHFRDLIFERELE
VIWEMICELLLHPHAWLRNVSNRLLSLYFTSANESKRGSVVKSNGSLFLMKPSRLFMIAA
SLCCQLKGPIDDDEAAVMDVKLGAKKENEKNHNHRSGLIAKNLVFSICCLNSLMKEWAGV
NRREFWSTFEQHEQERFLKAFRLLNSREATGMLLSVTGATDDQNDADHSEDLQYLLVSNL
LKELGKLALQMEAIQMRIVFYSFQKILPEIDQDDSQHYASLMMFPLYKVCEGFAGKIMTD
DLKQLAQEVLGSIRNSIGSQEFAQVYSEIKKKLKSKRDKRKRDEKRMAVINPVRNAKRKL
RIAAKNRANKKRRIMAMKMERWMR
NT seq
8175 nt
NT seq
+upstream
nt +downstream
nt
atggcaacaccctcgcatgctcaagctgtcaagtcgctcaataaatctgagggtcgtagg
cgctttgttttcaagactttctctcagagaatagatgatattgatattaatgtatttaga
agcctagaaaaaatcaagtcagagccctctcaaggttcaactttcctttgtgattgcctt
atcgagtggagggaattgaatacagcagaggatttcatttcattttatgtggaaacaatg
cctcttgtacagaccttaccctcggtactcttgcacaaggacttgatatttgataaactt
atatcccggttacaaatgaaagcgagattatctctcgagcctatactcagattgttggca
gccttctctagagatcttctcaaagattttctttcatttctgcctaggattgttgattcc
ttagtatctctcctcaaaagtggtgcagatagggagccagatatccttgagcagattttt
acttcatggtcatacattatgatgtatttgcagaagtatcttatacgggatgtcatacat
gttctcaaggttactgtgaggttaaggtattacccaaaggatcatgtccaagagtttatg
gcagaggctacatcattcttgctgcggaatgcacctgttgagcaacttataaaaggtatt
aggaagaccatgtttgaagttgtgaagaaaccattacctatccggaaatctggagttagt
gctttgttatgttatattatgttaggaacctcatcaaggttccattctggagcacagaga
gttttgcgattattggtggataattcaatatttgccattggtgataagtttcctgaaggc
tcagatgctattcttgaagttgtgattacttcctttcaaaaattaactgaggagctagaa
gccaaggagttaaatctaatgtgggagtgcttgtatcaggaaataagcgagactctagct
cacgggtcttgcttgcatctaagtcgtcttttatcgctgctaatatcttctcttcaggtt
aatagtgggcgtggtattttggactatcgacgaatgcttgaagttgtagagtccttggtg
ctgaaagttgtattgccttctagcaaaggaaatggtagtttatctgatgttgttgataaa
gttctgcaactagtgctacacattcttgatggactccacggttctaataatttgtctacc
atctctggctgtttgttgcagtgggctcctatatttgagttaagaaacacaagtttgtta
acttttctcagagaactactgctgagggacccatgtgtaatatattttttcaaagattat
gctttaagtgctatgaatgatctggtagaatcttcacaagaagaagttttatacctgtta
ctttctttctttgagagactgcaactgcatcctcaaagcactaaattcttagatgagatg
tccgaagggagactttcgaagatatgtgattatatgcaaggggttatcagtaactggatc
aagcttattaatgacattacaattggtaatccattaactgctcaaattgatgaggtcaag
ttggctatcttgtggggaattataagctgctatccatatgtgttcgatgtccaagcgagt
gaatctgcactgatagagttgatagatgccctgcagcggcttctgatgattgaggatgaa
agtattgcaggagtttccaaacacacttgggagagcctagttggtgctgctttaggttct
cgtaataaatggcataatgtaaaaaaggttggatttggagaaattagcaaagttttagac
cttgccaaggcctgcaaatcatcctctcaagtactatttgctgtcgctgattacttggat
aatgtgaatgggcctgcagtgcaagctgatagcaggaaggaaacatatcatcccttgctt
aaaggggagaatatggtggatgcagttggcatatttgcttatagtttgtgccacccagat
aaaggaattcgtcttcctagtctaagaattctgtgccattacgagcctctcaattgtgaa
acttctgctaaggatcagcatgctgagaagaaaatgaaaacagaggtttctcaggctggt
attattgatactgatgaaagcaatgttcttcagctcttaatgtctattgaggctactccc
ctttcaatttctaccagcaggaaggttaccttactgatatctaaaatacagacgggcctc
tctgctggaaggatacctaaaacatatgtacctctcgttttgaacgggataattggcatc
ttccataatcgttttagctatctatgggatgcggcttccgagtgccttgcagttctgatt
agcaatcacactggactagtctgggataaatttatttcttattttgaccgttttcagtcc
ctgatacaagcacctgatgttcaacatgacagagataatggaaatttatctgactcatct
agtgatcttgtaaggagattcgatttgtttgtgaatcctgcatctgataacacaccaggc
acagcagttttgtccttgttgctccaatctttgcaaaagattccttctgttgctgaatct
cgatcccgtcaaattatacccctatttttaaggtttttgggatatgatagtgataatctt
gtgagcccgggttcattcaattcagacatttatgaagggaaagagtggaagggtatcctt
aaagaatggctaggcttgttaaaactgatgaggaaccccagagcattctatcgaagtcaa
tttctaaaagatgttctgcaaagtaggctgctagatgacaatgattctgacatacaggca
agggttcttgattgccttttatcgtggaaagacgacttcttactcccatatgaccagcat
cttaaaaatctaatcaattcaaaatatctgagagaagaactgacaacatggagtttatct
aaagaagccggtctaattgaggaaggtcatagggttcatctggtgcctttagttgttcgc
ctcctgatcccaaaaatcagaaacttgaaaacgcttgctccacgaaagaatgcaagtgta
catcttcgaaaggcagttcttggtttcatagctcaactggattctaatgagctccatctt
ttctttgccttgttattgaaacccttgcaaattataccaaatgaagatggttatgcttct
aatttgttttcaaaccctatcgatgagtttcactccctaaattttctgaaatacttcacc
gtggaaaatataacagccctttcctggaagaaaagatatggttttctgcatgtaattgag
gatgttatgggtgtttttgatgaatttcgtgtcagaccttttcttgatctattaatggga
tgtgttgttcgggtattagcaagctgcagttctaacatagacactgccaaggttgctgaa
tcctctcctgtaagtgatcatcctgatgctgagatgatctctgatgacaaagacagtgca
gaggcaaaccatgtgaagattgggacgggcatgaagcagttcaaagatttgaggtctcta
tgtttgaaaattgtttctcttgttctcaataaatatgaggaccatgattttggtactgaa
ttctgggacctgttttttacatctttgaaacccttaatttatgccttcaagcaggagggt
tctagtagtgaaaaaccaagctccttgttctcttgctttttggctatgagtcggagcctg
caacttgtgtccctactttgtagggaaaggaatcttgttccagatatattttcaattcta
actgttccaactgcttcagaagctattgtttcttgtgttctgaagtttatttcaaacctg
cttgatcttgattgtgagttggattacgaaaactgtcctataaagagtttgatatgtcca
aacctagaagcacttgtctgcagcttgcatcatctgtttcagagtgataaagcatccaag
agaaaattggtcagatgtcctggggaaacagaaatcagaattttcaaattgctgttgaag
tacatcagaaatccattgctggcgaagaaatttgttgatatcttgcttcctttcttatca
aaaagagttcaaggttctgacatctgtctcgaagccatacaagtcattcaagatatcatt
cctgtgctagggaatgagagaacccctgaaatacttaatgcagttgctccacttcttgtt
tatgctaaattggatattcgagtgttaatttgcaatcttcttgaagcacttgctagaact
aattcgtctgtacttgtggtggctagacatgtcagacaattaaatgcaacctcagctttt
gagttggatgagcttgattatgacactataggacaggcatatgaaggaattggaattgga
ttcttccattctgtgccagtggagcatgcattacttattttgtcacaaactgtatatgat
atgtcatcagacgaattaatcttaaggcactatgcttataggttattgcttacatttcta
gatttttctggcaaaattcttggccaagaagttacagatcatcatgagactgctgaagag
attatgaaagttgatgaaggctgttggacacgagcatgtgttcaatgcatcattaacaag
tttcttttaaagcatatgggggatgcaattagtcggggaacttctgtgagaaaggaatgg
attgatttactgcgagaaatggttataaagcttccgcagttagagaatcttaattttttc
agagctttatgctctgaagatgctgatcaagattttttcaataatatcattcatttacag
aaacataagagagcaaaggctttgtctcgctttgcagatgttatcaataaaacctatatg
tctatggatatcattaataaagtgttccttccactctttttcaacatgttgtttgattta
caacatggaaaggatgaacatattagaactgcttgcatgcaagcacttgcttcagtttct
gctaagatggaatggaaatcatactatgcattactgcttcgctgctttagtgagatgaag
aagaatccagacaagcggaaagttctcttacggttaatttgctttatcttggacagattt
gattattcaaaattttgttccagtcaagaagcaataaattccgttgacaacattttaggt
tctgaaaccaatagtattgtttcttcagcaatgcagaaaggtggcagttctattatggtt
tctgagatacagacttctcttcagaaaactgttttgccaaagatacagaaattattgagt
tctgattctgataatgtcaatgttagtatcagtcttgcagcactgaaacttctgaaattg
cttccgggagatgtaatggagtctcagctttctagcatcattcatcggatttcgaacttt
ctaaagaaccgtctagaaagtattcgtgatgaagctagatctgcattggctgaatgtttg
aaggtgcttggacttgaatatctgcagtttataattcgagttttgagagcgaccttgaaa
cgtggatttgagctgcatgttctaggatatacacttaattttcttttgtcaaagaccctt
tcaagttcttctgacgggagtttggattattgtttagaagatctccttggtgtggttgaa
aatgatattcttggagatgttgctgaggagaaagaggtggacaagattgcttctaaaatg
aaagaaacgagaaagtgcaagtcttttgaaaccttgaaactgattgcccaaagcataact
ttcaaaatccatgcattaaagcttctttctcccattacaagtcacttgcaaaagcatctg
actccaaaagtgaaatcaaaattggagaatatgttaaagcacattgcggatggaattgag
tgtaatcaatcagtaaatcagactgatctcttcatttttgtatatggcctcataacagat
gcaactaatgacgaaaatgggtccggtgtgagttcaattggcacagaagcaaataaacat
gcaaatgttgtcagtgagaaaattgtttctccagaccgtgcttttaaaacaaaatctgca
tgttctcaccttattaccacgtttgcactaggggttttacaaaatagaataaaaagcatg
aaattggacagaaatgatgagcaactattatcaatgttggatccatttgtccaattgctt
ggcaactgcttgagttccaaatatgaagatattttatctgcatgccttagatgtcttact
ccattggtgaggctgcctcttccatcccttgaatcccaggctgataaattgaaggtgaca
ctgttgggtatcgcacaaggttcagtgaatgctggcaatcctcttatggaatcgtgtcta
aaattgttgactgtacttttgcgaagcacaaaaatcacattatcctcggatcagttacat
atgttagtccagtttccagtgtttgtggatcttgaaaggaatccctcctttgttgccctc
tcacttctaaaggcaattgttaaccgcaagctagtggttcatgagatctacgatattgta
gttcaggttgcagaattgatggtaactagtcaggtggaaccaattcgcaagaaatgcagt
cagatcttgttgcagttcttacttgattatcatctttcagagaaacgcttgcagcaacat
ttagatttcctgcttgcaaatctaaggtatcagcatccaactgggagagaatctgtgctt
gaaatgctccacacaattatgataaaatttcctaaagccattgttgatgagcagtcacag
accatatttgtccacctggtggtgtgcttggctaacgatcaagataataaagttcgttct
atgactggtgctgttataaagctccttattggttgtataagccaacattcgctgaattcc
attcttgagtatagtctgtcctggtatttgggtgagaagcagcaactgtggagtgcaggt
gcacaggtattaggattagtggtcgaggtcatgaagaaaaattttcagaggcatataagt
agcatattgccagtgactaaaagaattttgcactctgctattgatgcttttaccaacatg
cagatggatcttcctgatgaagctgctattcctttctggaaagagtcatactattcacta
attatgttggagaagatgctacatcattttcgtgatttaatatttgaaagggagcttgag
gtgatttgggaaatgatctgtgagttgctgttgcatccacatgcatggttacgcaacgta
tccaatcgccttctttccttgtattttacttctgcaaatgagtctaaaagaggaagtgtt
gtgaagtcgaatggatctttatttcttatgaagccaagtagactttttatgattgctgct
tctctttgctgccaactgaaaggacctattgacgatgatgaggctgctgttatggatgta
aagcttggtgctaagaaggaaaatgagaagaaccataatcaccggagtggtttgattgca
aaaaatcttgtgttctctatttgttgtctgaactccttgatgaaagagtgggctggtgtg
aaccgcagagagttctggtctacttttgaacagcatgagcaggagcggtttcttaaagcc
tttcgattgcttaattcgagggaagcaactgggatgcttctgtccgttactggtgccaca
gatgaccaaaatgatgcagaccattctgaggaccttcaatatctgcttgtctcaaatctg
cttaaggagctgggcaagcttgctcttcaaatggaggctattcagatgaggattgtcttc
tatagtttccagaaaattttaccagaaattgatcaggatgattctcaacattacgcgtcg
ctaatgatgtttccgttatataaagtttgtgaagggtttgccggaaaaattatgactgat
gatctaaagcaattagcacaagaagttttggggagtattcgaaacagtataggcagccaa
gaatttgcacaagtttacagtgagatcaagaaaaaactaaaatcgaagagggataaaagg
aaaagagacgagaagcgcatggctgttatcaacccggtccgcaatgccaagaggaagttg
cggattgcagccaagaatcgtgctaacaagaagaggaggataatggcaatgaaaatggaa
agatggatgcggtaa
DBGET
integrated database retrieval system
