Gossypium raimondii: 105776774
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Entry
105776774 CDS
T04129
Name
(RefSeq) flowering time control protein FY isoform X1
KO
K15542
polyadenylation factor subunit 2
Organism
gra
Gossypium raimondii
Pathway
gra03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
gra00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
105776774
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gra03019
]
105776774
Messenger RNA biogenesis [BR:
gra03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
105776774
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_IFT122_1st
Beta-prop_WDR5
WD40
Beta-prop_WDR3_1st
Beta-prop_THOC3
WD40_CDC20-Fz
WD40_Prp19
WD40_WDHD1_1st
Beta-prop_WDR3_2nd
Beta-prop_CAF1B_HIR1
WD40_Gbeta
Beta-prop_EML_2
Beta-prop_WDR36-Utp21_2nd
EIF3I
Beta-prop_EML
WDR55
Beta-prop_IFT140_1st
Beta-prop_WDR36-Utp21_1st
Beta-prop_TEP1_2nd
DSE1_N
ANAPC4_WD40
Beta-prop_WDR90_POC16_2nd
ASA1
Beta-prop_TEP1_C
WD40_MABP1-WDR62_2nd
Beta-prop_EIPR1
Beta-prop_WDR19_1st
Beta-prop_Aladin
Beta-prop_WDR41
CFAP251_N
Beta-prop_NOL10_N
Beta-prop_RIG_2nd
WDR90_beta-prop_4th
Beta-prop_SCAP
Beta-prop_WDR35_TULP_N
WD40_MABP1-WDR62_1st
Beta-prop_DCAF4
Beta-prop_SPT8
Beta-prop_WDR75_1st
WD40_RFWD3
NBCH_WD40
PAC11
Beta-prop_Vps41
Tricorn_2nd
Beta-prop_HPS5
WD40_like
Beta-prop_RIG_1st
WD_LRWD1
WDR54
Motif
Other DBs
NCBI-GeneID:
105776774
NCBI-ProteinID:
XP_012455131
UniProt:
A0A0D2UWI3
LinkDB
All DBs
Position
10:51075565..51083882
Genome browser
AA seq
718 aa
AA seq
DB search
MMYGDPQQQQNQPHPQAGEFQRGPPPPQMMRQPSASSTTLNSEYHHPGAPPPQMPPYDAH
GDNFAAKRMRKLTQRRAVDYTSTVVRYMQIRMSQRDSRDRTTLQPTPAAAIDMLPTAAYL
DNPSTSFAAKFVHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQA
HDQAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKVNKSAHKESVRDLSFCRTDLKFC
SCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDNVVKLWDAKTGRE
LCSFHGHKNTVLCVKWNQNGNWVLTAAKDQIIKLYDIRSMKELESFRGHRKDVTALAWHP
FHEEYFVSGSFDGSIFHWLVGHETPQIELPNAHDNSVWDIAWHPIGYLLCSGSNDHTTKF
WCRNRPGDTPRDKFNIGQNQGYGEQNPALASRMPGNFAAPEGPTTPGPFATRNEGTIPGI
GVPMPLSVPSLDASSQGDQKQLHPGSLPFGAPPLPPGPHPSLLANQQHGYQQNPQQIQQQ
QQQGMQQQMPPMPMGPPNMQLQPPSHMPLLPHPHLQRPPPQMPPHGMASQMPGSLNPPSS
MPTSHPMPMPGPMGMQGTMNQMPPSMPQGHFMGMNPMHSGSLPTSGGPSVGGFPNGMQNM
QGPGNMGGGQMYPQGSGFNRAQGGQMPMMPGYNPYQSGGQSGMPPPPTGPTPHGQTPQ
NT seq
2157 nt
NT seq
+upstream
nt +downstream
nt
atgatgtacggtgatccgcaacagcagcagaaccagccgcacccgcaagctggggagttt
cagagaggtcctccgcctccgcaaatgatgcggcagccatctgcttcttccactactctt
aactcagagtaccaccaccctggtgctcctcctcctcagatgccgccttatgacgctcat
ggtgacaattttgctgcgaaaagaatgagaaagctgacccaaaggagagctgttgattat
actagtactgttgtgcgatatatgcagattcgaatgtcacagcgggattcacgggacagg
acaacattgcagcctacaccagcagcagcaattgatatgttgccgacagctgcttattta
gataacccatccacaagctttgctgccaaatttgttcatacatctctaaacaagaaccgg
tgttctataaatcgcgttttgtggactcccacgggtagacgtcttatcacagggtcgcag
agtggagaatttactctatggaacggacaatcattcaattttgaaatgattcttcaggcc
catgatcaagccatcaggtctatggtatggagtcacaatgacaactggatggtttctggt
gacgatggtggtgcaataaagtattggcagaacaacatgaataatgttaaggtcaataag
tctgctcacaaagaatcagttcgtgacttaagtttttgtaggacagatttaaagttttgt
tcctgttctgatgatactactgtaaaagtatgggactttgcccggtgccaggaggagcgt
tcattaactggccatggttgggatgtcaaaagtgttgattggcatcctacaaaatcctta
ctggtttcaggtggaaaagacaacgttgtgaaactatgggatgctaagacagggagagag
ctttgctcatttcatggccataaaaatacagtactttgtgtcaaatggaaccagaatggg
aactgggtgttgactgctgcaaaggatcaaatcattaagctctatgacattagatctatg
aaggaacttgaatctttccgaggccacaggaaggatgtgactgcattggcttggcaccca
ttccatgaagaatactttgtcagtgggagctttgatggatctattttccattggctggtt
gggcatgaaacacctcagattgagcttcccaatgcacatgataatagcgtgtgggacatc
gcctggcatcctatcggatatcttctatgcagtggtagcaatgatcacaccacaaagttt
tggtgcagaaataggcctggagatacccctcgtgataaatttaacattggtcaaaatcaa
ggctatggtgagcaaaatcctgcattagccagtcgcatgcctggtaattttgcagcacct
gaaggcccaacaactccggggccatttgcaacccggaatgagggaacaatccctggcatc
ggagttcccatgccattatcagttccatctcttgatgcatcttctcaaggggaccaaaag
cagcttcatcctggttccttgccttttggagctcctcctcttcctcctggaccacatcca
tctcttctagccaatcagcagcatggatatcaacaaaaccctcaacaaattcagcaacag
cagcaacagggaatgcaacagcaaatgcctcctatgccaatgggacctccaaatatgcag
ctacaacctccatctcacatgcccctgcttccacatcctcatttacaacgccctcctccc
caaatgcctcctcatggtatggcttcacaaatgccaggatctttgaatccaccttcatca
atgccgacatcacatccaatgccaatgcctggtccaatgggcatgcaaggtacaatgaat
cagatgcctccttcaatgccacaaggtcattttatgggcatgaatccaatgcactcagga
tcattacccaccagtggtggcccttcagttggaggttttccaaatggtatgcaaaatatg
cagggccctggaaatatgggcggtggccaaatgtatccgcagggtagtggattcaatcgt
gcacaaggtggtcagatgccaatgatgcctgggtacaatccataccagtctggtggtcag
tctggtatgcctccaccgccaacgggtcccacaccacatggccaaactccgcagtaa
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integrated database retrieval system
