Gossypium raimondii: 105776877
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Entry
105776877 CDS
T04129
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 38
KO
K18655
ATP-dependent RNA helicase DDX19/DBP5 [EC:
5.6.2.7
]
Organism
gra
Gossypium raimondii
Pathway
gra03013
Nucleocytoplasmic transport
gra03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
gra00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
105776877
03015 mRNA surveillance pathway
105776877
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gra03019
]
105776877
Enzymes [BR:
gra01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
105776877
Messenger RNA biogenesis [BR:
gra03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
105776877
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
Motif
Other DBs
NCBI-GeneID:
105776877
NCBI-ProteinID:
XP_052478839
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All DBs
Position
10:61233707..61237350
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AA seq
493 aa
AA seq
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MAATAADSATSTISAADTTAHLADLKHDAVEEPSSSSKSEEKIASEIEIGNLTINESNNK
FFHDPESCNIKTITSGDTPYASAFTFEELNLLPELLKGLYVEMKYEKPSKIQAISLPMIL
NPPYLDLIAQAHNGSGKTACFTLGMLSRIDPKLKAPQAFCICPTRELAIQNLEVLRKMGK
YSGITSECAIRAGFGNEIHTGKKQTIRPPITSQIVIGTPGTIRHRIRANKLSLSYLKILV
LDEADHMLAEDGFKDDSVHIINKIRCVNPQCQVLFFSATFNETVKEFAAKIVKGNHNQLF
VKKEELSLQSVKQYKVNCPDELAKVMVIKDRILEFGERVGQTIIFVRTRNSAMTLHWILV
EIGYDVTTIQGALKQEDRDRIVKEFKDGLTQVLISTDLLARGFDQDQVNLVINYDLPVKH
NHPTEPDCEVYMHRIGRAGRFGRKGAVFNLLCSDADKTIMTKIENHFGTEIAEVRDWRNE
EDFVVALRSAGLL
NT seq
1482 nt
NT seq
+upstream
nt +downstream
nt
atggctgccaccgccgcagactccgccacgtccaccatttccgccgccgacacgacggca
catttggccgatttaaaacacgatgctgtagaggaaccaagcagttcctcaaaatcggaa
gaaaaaatcgcatccgaaatcgaaatcgggaacctaacgatcaacgagagcaataataag
ttctttcatgatcctgaaagctgcaacattaaaaccattacgtcaggggatacgccgtac
gcatcggcatttacgtttgaggaattgaatttgttaccagaattattgaagggattatac
gttgagatgaaatatgaaaaacctagtaaaattcaggcaattagtttgccaatgattttg
aatcctccttatttggatttaattgctcaagctcataatggttctggaaaaactgcttgc
tttactctcggaatgttatctcgtatcgatccgaaattaaaagctcctcaagcattctgt
atttgtcctaccagagaattggccattcagaatctggaagtgcttaggaagatggggaaa
tatagtgggataacttcagaatgtgctattcgagcgggatttggaaatgaaattcatacg
ggcaagaagcaaactattaggccgcctattacatctcaaatagttatcggcaccccgggc
actattaggcatcggatacgtgctaataaattgagtttgagttatctcaagattcttgtg
ttggatgaggctgatcacatgcttgcagaggatggatttaaagatgattctgtgcacata
ataaacaagattcgatgcgtcaatcctcagtgtcaggttctcttcttctctgccacattc
aatgagactgttaaagaatttgctgcaaagatagttaaaggaaatcacaaccagttattt
gtgaagaaggaagaactatcattacagtcggtgaaacagtacaaagtgaattgtcctgat
gaacttgctaaggttatggtgatcaaggaccgaattttggaattcggagagcgtgtagga
cagacgataatatttgtacgcaccaggaatagtgcaatgacgttgcactggatccttgtt
gaaattggttacgatgttaccacaattcaaggtgctctcaagcaagaagaccgagacagg
atagtgaaagagtttaaagatgggttgactcaagtccttatttcaaccgatcttcttgct
cggggttttgatcaagatcaggtcaatttggtgattaactatgaccttcctgtgaaacat
aaccatcctacggagcctgattgtgaagtttacatgcatagaattggcagagcaggacga
ttcggccgcaagggagctgtgttcaacttgctatgcagcgatgcagacaaaacgataatg
accaaaatcgaaaatcatttcggcacggaaattgcagaggttcgtgactggagaaatgag
gaagactttgtagttgctctcagatcagctggtttactgtaa
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