Gossypium raimondii: 105776987
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Entry
105776987 CDS
T04129
Name
(RefSeq) phytochrome B
KO
K12121
phytochrome B
Organism
gra
Gossypium raimondii
Pathway
gra04712
Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:
gra00001
]
09150 Organismal Systems
09159 Environmental adaptation
04712 Circadian rhythm - plant
105776987
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GFIT
Motif
Pfam:
PHY
PAS
PAS_2
GAF
HATPase_c
PAS_4
HisKA
PAS_9
PAS_8
PAS_3
Diguanyl_cycl_sensor
Motif
Other DBs
NCBI-GeneID:
105776987
NCBI-ProteinID:
XP_012455449
UniProt:
A0A0D2UVJ9
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Position
10:48013413..48019005
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AA seq
1196 aa
AA seq
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MTAASSCPRGSVTTLPPKPIPYNLHYIYTTDRISSQKYHHPPIPNKQPLNKVMSSGSRAV
HSHQQRQQQQQQQQQQQAQSSGTSNMRASHTHHQADSISKAIAQYTVDARLHAVFEQSGE
SGKSFDYSQSVKTTTQSVPEQQITAYLSKIQRGGHIQPFGCMIAVDEPSFRIIAYSENAR
EMLGITPQSVPNLERIEVLAIGTDVRTLFTPSSAVLLEKAFAAREITLLNPVWIHSKNSG
KPFYAILHRIDVGIVIDLEPARTEDPALSIAGAVQSQKLAVRAISELQSLPGGDIKLLCD
TVVESVRQLTGYHRVMVYKFHEDEHGEVVAESKRPDLDPYIGLHYPATDIPQASRFLFKQ
NRVRMIVDCHATPVRVVQDDGLMQPLCLVGSTLRAPHGCHAQYMANMGSIASLAMAVIIN
GNDDEATGGRNTMRLWGLVVCHHTSARCIPFPLRYACEFLMQAFALQLNMELQLAAQMSE
KRVLRTQTLLCDMLLRDSPSGIVMQSPSIMDLVKCDGAALYYQGKYYPLGVTPSEAQIKD
IVEWLLAFHGDSTGLSTDSLSDAGYPAATSLGDAVCGMAVACITKRDFLFWFRSHTAKEI
KWGGAKHHPEDKDDGQRMHPRSSFKAFLEVVKSRSLPWDNAEMDAIHSLQLILRDSFKDA
EASNSKAVAHAQLGGLELQGVDELSSVAREMVRLIETATAPILAVDVEGRINGWNAKAAE
LTGLSVEEAMGKSLVHDLVYEEYQETVDRLLSHALQGEEDKNIEIKMRTFGLEDHKKAIY
VVVNACSSKDYMNNIVGVCFVGQDVTGQKVVMDKFIHIQGDYKAIVHSPNPLIPPIFVSD
ENTCCLEWNTAMEKLTGWPRGEIIGKMLVGEVFGSCCRLKGPDALTKFMIVLHSAIGGQE
ADKFPFAFFDRNGKFVQALLTANKRVNMEGQIVGAFCFLQIATPELQQALRVQRQQEKKC
FARMKELTYICQEIKSPLNGIRFTTSLFEATELTENQKQFLETSVACEKQMLKIIRDVDL
ESIEDGSMELEKAEFFLGSVINAVVSQVMLLLRERNLQLIRDIPEEIKTLAVYGDQARIQ
QVLADFLLNMVRYAPTGEGWVEIHVRPSLKQISEGVTIVHTEFRMVCPGEGLPPELVQDM
FHSSRWMTQEGLGLSMCRKILKLMNGEVQYIRESERCYFLITLELPVPQSGSKNED
NT seq
3591 nt
NT seq
+upstream
nt +downstream
nt
atgacagcagcatcttcttgcccacgtgggtctgtcactactttgcccccaaaacctatc
ccttacaatttacactacatttacactacggacagaatttcctcccaaaaatatcatcat
ccccccatccccaacaaacaaccactgaacaaagtcatgtcttcaggcagcagagcagtt
cactcccatcagcaacgccaacaacagcagcagcagcagcagcagcaacaagctcagtcc
tcaggcacaagtaacatgagagcatcccatacccaccaccaggctgactctataagcaaa
gccattgctcagtacacagtcgatgctcgcctccacgctgttttcgagcagtcgggggaa
tcgggtaagtcatttgattactcccaatccgttaaaactactacccagtcggttcccgag
cagcaaatcactgcttacttgtctaaaatccaaagagggggccacatccagccatttggc
tgcatgattgcggttgacgaacccagtttccgtatcatcgcctacagcgaaaacgcacgc
gagatgcttgggattacccctcaatccgttcccaatttggagaggatcgaagttcttgca
attgggaccgatgttcgaacccttttcactccttccagcgctgttttgttggaaaaagcc
ttcgccgcccgcgagatcacgttgctgaatccggtttggattcactctaagaattcgggg
aagcccttttacgctattttacataggattgatgttggaattgtgattgatttagaacct
gctagaactgaggatcctgccttgtctattgccggggctgtccaatcgcagaaattagct
gtccgtgctatttctgagttacagtccctccctggaggcgatattaagcttttgtgtgac
acggttgtggaaagtgtgagacaacttactggatatcatagggtaatggtttataaattt
catgaggatgagcatggggaggtcgtggccgagagtaaaaggcctgacttggacccttac
ataggtttacattatccggcaacggatattccccaggcttcaaggtttttgtttaagcag
aatagagttaggatgatagtggactgtcatgccacgccagtgcgtgtggttcaggatgat
gggttaatgcaacctctgtgtttggttggatccactcttcgggcccctcatggttgccat
gctcagtatatggctaacatggggtcaattgcttctttggcgatggcagttattatcaat
ggaaatgacgatgaagctactgggggaagaaatacgatgaggctttggggtcttgttgtt
tgtcatcatacttctgcacgttgtattccatttccacttcgatatgcttgtgagttccta
atgcaagcatttgcacttcaactgaatatggaattgcaattggcagctcaaatgtcggag
aaacgtgttttgaggactcaaactcttttgtgtgatatgcttcttcgtgactctccatct
ggcattgtcatgcaaagtcccagcattatggatcttgtgaaatgtgatggggctgccctt
tattaccaaggtaagtattacccattaggtgtgacgccatctgaggcccagataaaagat
attgttgagtggttgttggcattccatggagattcgactggtttaagcaccgatagtttg
tctgatgctggttaccctgcggcaacctcacttggggatgcagtttgtgggatggctgtt
gcttgtattactaaaagggattttctattctggttccggtcacacacagcaaaagagatc
aaatggggtggtgcaaagcatcatccagaggacaaagatgatggtcaaagaatgcatcca
cgatcttcattcaaggcatttttggaagtggtcaagagtcggagtttgccatgggataat
gctgaaatggatgcaattcactcactgcagcttattcttcgtgactcattcaaggatgct
gaagcaagtaattctaaagccgttgcacatgctcagcttgggggactagagctacaaggg
gtggatgagcttagttcagttgcaagggaaatggtgaggttaatagagactgcaactgct
cccatattggccgtagatgttgaaggtcgcattaatgggtggaatgcaaaagctgcagaa
ttaacaggactctcagttgaggaagccatggggaagtctttggttcatgaccttgtttat
gaggaatatcaagaaacggttgacaggcttcttagtcatgctttgcaaggcgaagaagat
aaaaacatagagataaaaatgaggacttttggcttagaagatcataaaaaggctatatac
gtggtggtgaacgcttgctctagtaaggattatatgaataatattgttggagtttgcttt
gttggtcaggatgttacaggccaaaaggtggtgatggacaaattcatccacatacaaggt
gattacaaggccattgttcatagtcccaatcctttgattccaccaatatttgtttcggat
gaaaacacatgttgcttggagtggaacactgccatggaaaagctcactgggtggcctcgg
ggggaaatcatagggaaaatgttagttggtgaggtttttggcagttgctgtcgcctcaag
ggtccagatgctttgacaaaattcatgattgttttacatagtgcaattggagggcaggag
gcagataagttcccttttgccttctttgaccgcaatgggaaatttgttcaggcactgttg
acagcaaacaaaagggtgaatatggaaggccagattgtaggagcgttttgtttcctgcag
attgcaactccagagttgcagcaagcactgagagtccagaggcaacaggagaaaaaatgc
tttgctagaatgaaagagttaacctacatttgccaggaaataaagagtcctttgaatggg
atccgctttactacctcactttttgaagctacagagctgactgaaaaccaaaagcaattt
cttgagactagtgttgcttgtgagaagcaaatgttgaagatcataagagatgttgatttg
gagagcattgaggatggttctatggagcttgaaaaggctgaatttttccttgggagtgtc
ataaatgctgttgttagccaagtaatgctactgctgagggaaagaaatctacagttaatt
cgggatataccagaggagatcaaaacattggctgtttatggcgatcaagcaagaattcaa
caggtattggctgattttttgttgaatatggttcgttatgcaccaactggtgaaggctgg
gtagagattcatgttcgtccatctttgaaacaaatatccgaaggagtcaccattgttcat
acagaattcaggatggtatgccccggtgaaggccttcctcctgagttggttcaagacatg
ttccatagcagtcgatggatgacacaggagggcttagggttgagcatgtgccggaaaatc
ttaaagctcatgaatggtgaggtccaatatatcagagagtcggaaagatgttatttctta
attactctagaacttcctgtacctcagagtggctcaaaaaacgaagactag
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