Gossypium raimondii: 105777021
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Entry
105777021 CDS
T04129
Name
(RefSeq) polygalacturonase
KO
K01184
polygalacturonase [EC:
3.2.1.15
]
Organism
gra
Gossypium raimondii
Pathway
gra00040
Pentose and glucuronate interconversions
gra01100
Metabolic pathways
Module
gra_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
gra00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
105777021
Enzymes [BR:
gra01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.15 endo-polygalacturonase
105777021
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Motif
Pfam:
Glyco_hydro_28
Pect-lyase_RHGA_epim
Motif
Other DBs
NCBI-GeneID:
105777021
NCBI-ProteinID:
XP_012455520
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Position
10:52752879..52754635
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AA seq
394 aa
AA seq
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MKLSGFNSLGFVLIVFVMLSACSTFAMTEFNVLNFGANLNGRTDSTNSFLKAWNAACGTA
DSTFIYVPKGRCLVGPLAFKGQCKSPQIIIRIDGTIVAPLDYGVLGKSDNWFSFEGVSGV
SIIGRGIFDAKGPSLWACKAPNSNSCPSGARMFCKSNNIRINGLTSLNSQMFHIVINGCQ
NVHLRGVKIVAAGNSPNTDGIHVQLSRNVEILSTFIKTGDDCISIGPGTENLWIEQVTCG
PGHGISIGSLAKDLKEEGVQNVTVKNTIFSNTQNGLRIKSWARPSSGYVQGVRFIGSVMT
NIQNPIVIDQNYCPRNENCPGQVSGIKIKDIVYEDIRGTSSTPIAIEFDCSSKNPCTGIR
LQNVNLTYLNKTTQSFCSNVVGKVFDLVRPNSCL
NT seq
1185 nt
NT seq
+upstream
nt +downstream
nt
atgaagctttctggttttaattcccttggatttgttttaatcgtgtttgttatgttaagt
gcatgttcaacattcgcaatgacggagtttaatgttttgaactttggggctaacttgaat
ggtcgaaccgattcgaccaacagtttccttaaggcatggaatgcagcctgtggcacggca
gactcgaccttcatatatgtgccgaaaggacggtgtttggtgggtccattggcttttaaa
ggccaatgcaaaagccctcagatcatcataagaatcgatggcaccattgtggctccttta
gattatggagtgctgggaaagtcggataattggttcagctttgaaggtgtgagcggcgtt
tctataattggtcgaggtatatttgatgctaaaggaccttctctttgggcttgcaaagct
cccaactccaactcatgtccttctggggccaggatgttttgtaaatcgaacaacattagg
attaatggattaacatctttgaatagccaaatgtttcatattgtgatcaatggttgccaa
aatgtgcacctccgaggagttaagatcgtcgctgctggtaatagtcccaacactgatggc
atccatgtccaattatcgagaaatgtggaaattttaagcactttcattaaaacgggagac
gattgcatctcaatcggtcctggcactgaaaatttatggattgaacaagtcacatgtggt
cctggtcatggcatcagcatcggaagtttggcaaaggatttaaaagaggaaggagttcaa
aatgttacggtgaaaaacacaatcttttccaacactcaaaatgggttgagaatcaaatca
tgggctaggcctagtagtggatatgttcaaggggttcgatttataggttctgtgatgaca
aatattcaaaatcctattgtgatcgatcaaaattattgtcctcgcaatgaaaattgtccg
ggtcaggtttcgggaataaagattaaagatattgtgtatgaagatataagaggaacatct
tcaacacccatagctatagaatttgattgtagttctaaaaacccgtgcactggaataaga
ttacagaacgtgaatttgacatatttgaacaaaacaactcaatcattttgtagcaatgtg
gttggaaaagtatttgatttagttcgaccaaacagttgtctgtaa
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