Gossypium raimondii: 105777669
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Entry
105777669 CDS
T04129
Name
(RefSeq) exosome complex component RRP4 homolog
KO
K03679
exosome complex component RRP4
Organism
gra
Gossypium raimondii
Pathway
gra03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gra00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
105777669
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gra03019
]
105777669
Messenger RNA biogenesis [BR:
gra03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
105777669
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
105777669
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GFIT
Motif
Pfam:
RRP4_S1
KH_6
ECR1_N
RRP40_S1
EXOSC1
ATPgrasp_YheCD
Motif
Other DBs
NCBI-GeneID:
105777669
NCBI-ProteinID:
XP_052478730
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All DBs
Position
10:14730844..14734512
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AA seq
321 aa
AA seq
DB search
MRGLQLPLSQTQRIRLQRALEKLQSLSCKANSDASVTVADTIPVNYEDAFLKGHGTTDLN
GDLVATLCGVVERINKLVYVRALRARYKPEVGDIVVGRVVEVSQKRWRLEINFSLDAILM
LSSMNMPDGIQRRRTALDELNMRCIFEENDVVCAEVRNFQHDGSLQLQARSQKYGKLEKG
QLLIVDPYLVKKSKQHFHHLEQFGIDLILGRNGFIWVGEHVEARDSMVVDQANSSEQSRV
PEEKNQTHTPLEMRQNICRIANAVRVLSTLGFSIDADLILETVELSSTVKIDIHDMLGSE
FHVLVAEREPERRSLMGKRKR
NT seq
966 nt
NT seq
+upstream
nt +downstream
nt
atgagaggattacagctgcccttgagccaaacgcaaagaatacgacttcaaagagcattg
gaaaagcttcagtctctttcttgtaaggccaattccgacgcttccgttaccgtcgccgat
accattcccgtcaactacgaagacgcttttctcaaagggcatgggacaacggacctaaat
ggcgatttggtggcaactctgtgtggcgtggtggagcgcatcaacaaactggtctatgta
cgcgccttacgcgctaggtacaagcctgaggttggggatatcgtagtgggacgtgtagtt
gaggtttctcaaaagcgatggagattggagataaatttcagcctagacgccattttaatg
ctttcctccatgaacatgcctgatggtattcagaggcggcgtactgctttggatgaactc
aacatgcgttgtatttttgaagagaacgatgttgtctgtgctgaggttcgtaatttccag
catgatggcagcttgcaactccaagcaagaagtcaaaagtatgggaagcttgagaagggt
caattgctcatagttgatccttacctagtgaagaaaagcaaacagcatttccatcacctt
gaacagtttggaattgacctgatactcggacgtaatggattcatatgggttggtgaacat
gttgaagccagagacagtatggtagtggatcaagctaatagttctgaacaatccagggtt
cctgaagaaaaaaaccaaactcatacccctctagagatgaggcagaacatatgcagaata
gcgaatgctgttcgtgtgctgtcaactttaggtttcagtatcgatgcagatttgatcttg
gagacagttgagttgagcagcacagtgaaaattgacatacatgacatgctaggctcagag
tttcatgttttggttgcggaaagggaacctgagcggagaagcttgatgggaaagcggaaa
agatga
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