Gossypium raimondii: 105779139
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Entry
105779139 CDS
T04129
Name
(RefSeq) LOW QUALITY PROTEIN: probable CCR4-associated factor 1 homolog 11
KO
K12581
CCR4-NOT transcription complex subunit 7/8
Organism
gra
Gossypium raimondii
Pathway
gra03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gra00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
105779139
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gra03019
]
105779139
Messenger RNA biogenesis [BR:
gra03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
105779139
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
105779139
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
eIF-4B
Motif
Other DBs
NCBI-GeneID:
105779139
NCBI-ProteinID:
XP_052485841
LinkDB
All DBs
Position
4:2746769..2748073
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AA seq
308 aa
AA seq
DB search
MSIFVNKPVIVREVFADNLEYEFMLIQSALNNYPFVSMDTEFPGTIFKPDKNIVQLGNPE
INYRFMKVNVDALKIIQLGLTLSDSEGNLPDFGTPFCYIWEFNFRDFDIEKDRYDKESIE
LLKRQGIDLTRNKEKGIYSRDFGMMFLISGLGFGELTWVTFHSAYDFGFLLKILTQHPLP
PDLKSFMRHMTYYFGCRIFDIKYNFKIFNLHGGLEKVAKTLNVARVAGLSHQAGSDSLLI
LHCFMRIKNMKAFKQCNQNLPALALYGLVXARPREEVLKEKGKDWKEIDEKLEAMKIKGT
VAVTEKER
NT seq
927 nt
NT seq
+upstream
nt +downstream
nt
atgtcgatttttgtcaacaaaccagtgattgttagggaagtatttgctgacaatttggaa
tacgagtttatgttaattcaaagtgcactcaacaattatccttttgtttctatggatact
gaatttcctggtacgattttcaaaccagacaaaaatattgttcaactaggaaatcctgaa
atcaattataggttcatgaaagttaatgtcgatgctttgaagatcattcaacttggttta
acactctctgattctgaaggtaatttgccagatttcggaactcctttttgttatatatgg
gagtttaattttagagattttgatattgaaaaagatcggtacgataaagagtctattgag
ttacttaaacgacaaggtatagatttgacgaggaataaggaaaaaggtatttattcgaga
gatttcggcatgatgtttcttatttccgggttgggtttcggtgaattgacttgggtaact
tttcacagcgcttatgattttgggtttttgttgaagattttgactcaacatccattgccg
cctgatctcaagtctttcatgcgacatatgacttattacttcggttgtaggatttttgac
attaagtacaatttcaagatctttaacttacatggtgggctagaaaaggtggcaaaaact
ttaaatgtggctcgtgttgctggattaagccatcaagcaggatctgatagccttctcatc
ctccattgttttatgcggattaaaaatatgaaagcttttaagcaatgtaaccaaaattta
ccggccttagcgttgtacggattggtttgagcaaggccgagagaggaggtgttgaaggaa
aaggggaaagactggaaggagattgatgaaaagcttgaagctatgaagattaaagggaca
gtagctgttacagagaaagagagatga
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