Gossypium raimondii: 105779398
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Entry
105779398 CDS
T04129
Name
(RefSeq) probable pectate lyase P59
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
gra
Gossypium raimondii
Pathway
gra00040
Pentose and glucuronate interconversions
gra01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
gra00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
105779398
Enzymes [BR:
gra01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
105779398
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Motif
Pfam:
Pec_lyase_N
Pectate_lyase_4
Beta_helix
Motif
Other DBs
NCBI-GeneID:
105779398
NCBI-ProteinID:
XP_012458594
UniProt:
A0A0D2V856
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Position
4:10336..12213
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AA seq
440 aa
AA seq
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MDAAGNRSCKLLLFFFAAIIPALQGHIGEYDEYWKQRELEAKENTEQAYNPNPEEVTQHV
NHLVSRSLMRLNSTRRHLRARKKGGPCDPTSPIDQCWRCDRNWEKNRQRLADCAIGFARG
TIGGKYGRIYVVTDPSDDDLLNPKPGTLRHAVIQKEPLWIIFARAMIITLKEELIMSGDK
TIDARGANVHVAYGAGITIQYVRNVIIHGLHIHHIVPGNGGMIRDSVNHYGFRTKSDGDG
ISLFGATNVWLDHLSMYKCRDGLIDAIQGSTAITISNCHFTHHDQVMLFGANDNHKMDEK
MQITLAFNHFGKGLVQRMPRCRWGFIHVVNNDYTHWLMYAIGGSSHPTVISQGNRYIARR
HVASKEVTKRDYAPPEVWKTWNWRSEGDLMVNGAFFSQSGDPKASSKFKGDTKVSAKPAY
KVDLLTKDSGTLICIRGRAC
NT seq
1323 nt
NT seq
+upstream
nt +downstream
nt
atggatgccgccggcaatcgaagttgtaagttactattatttttcttcgctgccataatc
ccagccctgcaaggtcacatcggagaatatgatgagtattggaaacaacgtgaattggaa
gctaaagaaaacaccgagcaggcatataaccccaatcctgaggaagttacccagcatgtc
aaccaccttgtttccaggtcgctgatgaggctaaatagcacaagacgacatttgagggca
agaaaaaaaggcggtccctgcgatccaaccagccccattgaccagtgctggcgctgtgat
cgtaactgggagaaaaacaggcagagactggctgattgcgccattggattcgcacgtggt
actattggtggaaagtacggcagaatttacgtagtgaccgatccttcagatgatgatttg
ttaaatcctaaacctggaaccctacgtcatgctgtgattcagaaggaacctctttggatc
atctttgcacgagctatgatcatcacgctaaaagaggagctcattatgtcgggtgacaaa
acaatcgacgctaggggagccaatgtgcatgtggcttatggggctggtattactatccaa
tatgtgaggaacgttattatccatggcctccatattcatcacattgttccgggcaatggc
ggcatgatcagggattccgtaaaccactatggattcaggacaaagagcgatggtgatggg
atttctctttttggagcaacgaacgtttggcttgatcacctttcaatgtataagtgtagg
gatggtctcattgatgccattcagggatcaactgccataacaatctccaactgccatttc
actcatcacgaccaggtgatgttgtttggagcaaatgacaatcacaaaatggatgagaag
atgcagatcactcttgctttcaaccacttcggtaaaggattggtacaaaggatgccgagg
tgtcgatgggggtttattcacgtggtcaacaatgactatactcattggctcatgtatgcc
attggaggtagtagccaccctaccgtcatcagccaaggcaaccgatatattgctcgacgt
cacgtggcatccaaggaggtgaccaagagggactatgcaccaccagaagtatggaagacg
tggaattggagatcagaaggggacctgatggtgaatggggcttttttctctcaatccggt
gatccaaaagccagctcgaaattcaaaggcgacactaaggtttctgctaagcctgcttat
aaggtggacttacttacaaaagattctggaacacttatatgtatccgtggccgagcttgc
taa
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