Gossypium raimondii: 105779538
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Entry
105779538 CDS
T04129
Name
(RefSeq) SWI/SNF complex subunit SWI3D
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
gra
Gossypium raimondii
Pathway
gra03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
gra00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
105779538
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gra03021
]
105779538
03036 Chromosome and associated proteins [BR:
gra03036
]
105779538
Transcription machinery [BR:
gra03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
105779538
Chromosome and associated proteins [BR:
gra03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
105779538
PBAF complex
105779538
GBAF(ncBAF) complex
105779538
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_1
SWIRM
Myb_DNA-binding
ZZ
Myb_DNA-bind_6
Motif
Other DBs
NCBI-GeneID:
105779538
NCBI-ProteinID:
XP_012458785
UniProt:
A0A0D2VZQ8
LinkDB
All DBs
Position
4:complement(2758852..2764437)
Genome browser
AA seq
1014 aa
AA seq
DB search
MEEKRRDAVNSPAEPELASTRRRGGALKRKVNSLSGSSSSSTPSKRVTREKSNLISHSPV
NHYGPLTRARQGAPSGNLALGSSSGSGGAKLEETNLVKQSVKAEDLEELKASEELEALEA
KIEADFEAIRSRDSNAHVVPNHCGWFSWTKIHHLEESILPSFFNGKSPNRTPDAYKEIRN
WIVKKFHANPSKQIELKDLEDLEVGDLDARQEVLEFLDYWGLINFHPFPPAGSAVPNPNG
DGDGDGMTEKDSLLENLFHFDEIESRPQVVTKPNLSSPSLPSGLLPESAVAEDLMNPEGP
SVEYHCNSCSADCSRKRYHCQKQADFDLCTDCFNNGTFGSGMSSSDFILMEPADPGLSGG
KWTDQETLLLLEALELYKENWNEIAEHVATKTKAQCILHFVQMPIEDVFFNCDDNNIDTN
SKETAGPAAMNDETTVPKDVSETTESKTTQEDQAQTTPMETSKPEDEKEVRGSEEPSETK
TGTDAKGVKETLKPEDMNVRKDGLEATENCALTAIREAFEAVGYNLTSESKLSFADVGNP
VMALAGFFAHLVGPNIAAASSQSSLKSLSGTCPNIQLAARNCFVLEDPPDEKEPTCSKSV
ANDTGNRGAQNVKHSGDESLKGDQKSSLSHHGDENTEVSLREENATSPSPNDLTTDKKES
SNFATNEEDKKANLNESSIINQSKDHQPSVTRVSNNLTSQVLPSSLEETGGKETAKEPSQ
PPKAVKEVDMSGSVQLKKNEPCDAAASKPVGELSEPANASENLETASCSPSRSKNEQKTV
KPIPDGESTEPADASDDVQLVSVSQPSERSEPPQPVTSNSVNENGVTTDKIEEGKSKNHD
STEREDNSSIDKLKRAAVTALSAAAVKAKLLADQEEDQIRQLTTSLIEKQLHKMEAKLSF
FNEMEGVVMRVKEQLDRSRQRLYHERTQIIAARLGLPASSSRAMPPPNAANRVATNFANS
VARPPMSMKAPRPPLSRPMGSMTPTPSNPYVSNTVAGSSIRPGSQDNLSSVGTK
NT seq
3045 nt
NT seq
+upstream
nt +downstream
nt
atggaggagaaacgccgggatgcggttaactccccggcggaaccggagctggcatcaact
cgccgtcggggtggagcgctgaagagaaaagttaattcgctttccgggtctagttcttca
tcaactccgtcgaaacgggttactcgggagaagtcaaacttgatctcccactctcccgtt
aaccattacggtccgttaaccagggctcgccaaggggcccctagtggaaacctagccttg
ggttcgagttcgggatcgggtggcgcaaagcttgaggagacgaatttggtgaaacaaagt
gtaaaggcggaagatttggaagaattaaaggcaagtgaagagttggaggctttggaagct
aagattgaggctgattttgaggctattaggtctcgtgatagtaatgcgcatgttgttcct
aatcattgcggatggttttcatggacaaaaattcaccatctggaagagagtatcttgcct
tctttctttaatgggaaatccccaaatcgtacccctgatgcatacaaggagattcgcaat
tggattgtgaagaaatttcatgcaaatccaagcaagcagattgagttgaaagatctggaa
gatcttgaagtcggtgacttggatgcaaggcaggaggtattggagttcctggactactgg
ggtttgattaattttcatccattccctccagctggttctgctgtgcctaatcccaatggg
gatggggatggagatgggatgacagaaaaggattctttgcttgaaaatttgtttcacttt
gatgaaattgaatcacgcccacaagttgttaccaagcctaacctttcaagcccatctcta
ccatctgggctacttccagaatctgcggtcgctgaggacttgatgaatccggaggggcca
tctgttgagtaccattgcaactcttgttcagctgattgctctaggaaacgctaccattgc
cagaagcaggcagattttgacttatgtactgattgctttaacaatgggacattcggttct
ggcatgtcttcatcggattttattctcatggaacctgctgaccctggtcttagtggcggc
aagtggacagatcaggaaacccttctccttcttgaggcacttgaactttataaagaaaac
tggaatgagattgcagagcatgttgctacgaaaacaaaagcacaatgcatactgcatttc
gttcaaatgccaattgaggatgtattttttaattgtgatgataataacatagacacgaat
tcaaaagaaactgctggcccagctgccatgaatgatgaaacaactgtccctaaagatgtc
tcggaaacaacagagagtaagactactcaagaagatcaggcccagactacgccgatggaa
acttcaaaacctgaagatgaaaaagaagtcaggggtagtgaggaaccatcagaaaccaaa
actggaactgatgcaaaaggtgttaaagaaacattaaaaccagaagatatgaatgtacga
aaagatggactagaagcaactgaaaattgtgcccttacagcaataagggaggcatttgaa
gctgtcggttataatttaacatccgaaagcaaactttcatttgctgatgtaggaaatcct
gtcatggcattggcaggattctttgcacatctggttggacccaacattgctgctgcttca
tcccagagttcacttaaatcattatctggtacttgtccgaacattcaactggctgccagg
aactgctttgttttggaagatccaccagatgagaaggaaccaacatgttctaagagtgtc
gccaatgatacgggtaatcggggtgctcagaatgtgaaacactcgggagacgaaagcctc
aagggggatcagaaaagttcattgagccaccatggtgacgaaaacactgaagtctctctt
cgtgaagagaatgcgacatcgccttcacccaatgacctaaccacggataaaaaagagtca
agcaattttgccactaatgaggaagataaaaaagctaatttgaatgaatccagcattatt
aatcaatcaaaggatcatcaaccaagtgtaacaagggtatcaaataacttaacatcccag
gttctaccaagttctctagaggagacaggtgggaaggaaacagctaaagaaccttctcag
cctccaaaagcagtgaaggaagtagatatgtctggttctgttcaactgaaaaagaatgag
ccttgtgatgctgctgcatcaaagccagtgggagagctatcggaaccagcaaatgcatca
gaaaatctagagacagcttcctgctctccatccagatcaaagaatgagcaaaaaactgtt
aaaccaatccctgatggggaatctacggagcctgcagatgcatcagatgatgttcaactg
gtgtctgtttcacaaccatctgaaaggagtgaacctccacagccagtcacatcgaattca
gtaaatgaaaatggagtaacgacagacaagatcgaagaaggtaaaagcaagaaccatgac
tctacagagagagaagataatagtagcattgataaattaaagagagctgcagttacagca
ctctcagcagcagcagtgaaggcaaaacttctagcagaccaggaagaggaccaaatccga
caacttaccacatcattaatagaaaagcagttacataagatggaagccaaattatctttc
ttcaatgagatggagggagtcgtaatgagggtgaaggagcaattggacaggtcaaggcaa
aggctttaccatgagcgaacgcagataattgctgctcgactgggcttaccagcttcctcc
tctagagcaatgccgccaccaaatgctgcaaatagagttgcaacaaactttgcaaactcg
gttgcaaggcctccaatgagcatgaaagccccaagaccaccattgtcgagacccatgggt
tctatgacccctaccccttccaacccatatgtatccaatacagttgcagggagttcaatt
cgacctggtagccaagacaatctttcctccgttggaaccaagtag
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