Gossypium raimondii: 105779703
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Entry
105779703 CDS
T04129
Name
(RefSeq) paired amphipathic helix protein Sin3-like 2 isoform X1
KO
K11644
paired amphipathic helix protein Sin3a
Organism
gra
Gossypium raimondii
Brite
KEGG Orthology (KO) [BR:
gra00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
gra03036
]
105779703
Chromosome and associated proteins [BR:
gra03036
]
Eukaryotic type
Histone modification proteins
HDAC complexes
Sin3A-HDAC complex
105779703
REST complex
105779703
Heterochromatin formation proteins
Other heterochromatin formation proteins
105779703
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PAH
Sin3a_C
Sin3_corepress
PAH_ZNF598
Motif
Other DBs
NCBI-GeneID:
105779703
NCBI-ProteinID:
XP_012459047
UniProt:
A0A0D2V297
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All DBs
Position
4:complement(42502948..42511688)
Genome browser
AA seq
1363 aa
AA seq
DB search
MKRIREDIYSGSQFKRPFGSSRAESYGQNQMLGGGGVGRGGAAGGGEGGGTVGGGMSQKL
TTNDALTYLKEVKEMFQDKKEKYDMFLEVMKDFKAQRTDTVGVIARVKELFKGHNNLIYG
FNTFLPKGYEITLHENEAPPKKTVEFEEAISFVNKIKKRFQNDEYVYKSFLDILNMYRKE
HKDINEVYNEVASLFEDHPDLLDEFTRFLPDSSAAPLTEQVPYGRTSTQRYNEQSSATPT
LQHIQMDKQRQRDWIMTAHADRGLSVDRPELDDDKDILKMQKDQRKRVEKDSRDRRTREH
DDPEHDNNRDFNLQRFPDKKRLGRKIEGFASNDERETFKSMCNQGFIFCEKVKERLCSSD
DHQAFLKCLNIYSYGIIKRNDLQNLVTDLLGKHPDLMNEFNQFLECCENTDGLLAGVISK
KSLSGNGHTSRPVKIEEKDREQRREMEGPKEKERYREYLAKSIQELDLSNCQSCTPSYRL
LPDDYPIPSASQRSALGAQVLNDHWVSVTSGSEDYSFKHMRRNQYEESLFRCEDDRFELD
MLLESVSSTAKRAEDLLNSINENKINMDSPIRVQEYFTVLNLRCIERLYGDHGLDVMEIL
HKNPALALPVILTRLKQKQEEWTKCRSDFNKVWAEIYSKNHYKSLDHRSFYFKQHDSKNL
SVKSLVAEIKELKEKNQKEDDVLVASVAGHRQPLAPHLNYEYLDVDIHEDLYKLIEYSCE
EMCSTKEQLSKVMRLWTTFVEPMSGIPPRPNGKEGTDDAGKAQNPAVNCVTSSIAESGGS
PRADTTVNSTQQKAATDRDENGSPELTNSCRNGLANGETSAKEHSSHLSRDDLKKNTQPG
INMLAIGALAFEAENNHSKSNTEGASAASRPSSVAAGEDLEPEANADLLHTSEGGDVTKH
ALLVNGVPTDETNASRYLEELAGPLKIEKEEGELSPNGDFEEDNFVAHGDNGLKAVPVAK
HSVESGQYQSGKGSQCKDAGVENGADADDEDGENASEAGDDASGSESADDECSRGEHEEE
EVELDEVDGKAESEGEAEGMNDMHAGGDGMSVATSEQFLFTVKPLAKHVPAVFPEEDQNI
SRVFYANDDFYVLFRFHQILYERILSAKTNSTGAELKRKNSKELCSSDLYARFMSALYSL
LDGSSDNMKFEDECRAIIGNQSYVLFTLDKLIYKLVKQLQAVATDEMDNKLLQLFEYEKS
RKHARTMDSVYYENARVLLHEENIYRLKSSSSPSRLSIQLMDNVIEKPEAFAVSMEPNFS
AFLHNDFLSVFPGKKEPHGVTLKRNKKKYANLDEFAAICMAMEGVELVNGLENKIACNSY
KISYVLDTEDFFCRRRRNSPPKCGSYNTQARLQRFHKFLSASQ
NT seq
4092 nt
NT seq
+upstream
nt +downstream
nt
atgaagcgaataagagaggatatatattccggttctcaatttaaacgcccatttggttct
tcgagggctgaatcctatgggcaaaaccaaatgctgggtggagggggagtgggaagggga
ggagcagccggaggaggtgaaggtggaggaacggtaggaggaggcatgtcacagaaactg
actacaaatgatgctttaacgtatctaaaggaagtgaaggagatgtttcaggataaaaaa
gagaaatacgacatgttccttgaagtcatgaaggatttcaaggctcagagaactgataca
gttggtgtcattgcccgagttaaggaattattcaaagggcacaacaacttgatttatgga
tttaataccttcctacctaagggatatgaaataacccttcatgagaatgaggctcctccg
aaaaagacggtggaatttgaagaagcaatcagttttgttaacaagataaagaaacgattc
caaaacgatgagtatgtttataaatcattcctggatatcttgaatatgtacaggaaggag
cacaaggacataaatgaggtctataatgaggttgcttctctttttgaggaccatcctgat
ctgctagatgagttcacaagatttttaccagattcttcagcagcgcctttgactgaacaa
gttccatatggtcgaacttcaactcagcgctataatgagcaaagctctgctacacccacc
ttgcagcatatacaaatggacaagcaacgtcagagggattggattatgacagcccatgct
gacagaggtctcagtgttgatcgtcctgaactggatgatgataaagatatcctgaaaatg
caaaaagaccagagaaagcgtgtggaaaaggacagtagggatcggagaactcgtgaacat
gatgatcctgagcatgacaacaacagggattttaacttgcagcgatttcctgacaaaaag
agattgggaaggaagattgaaggatttgcttccaatgatgagagagagacttttaaaagc
atgtgcaaccaagggttcatattctgtgagaaagttaaggagaggctatgcagttctgat
gaccaccaggcattcttaaagtgccttaatatttatagctatggaataataaaaagaaat
gatttgcaaaatttggtgactgatttacttggcaagcatccagatcttatgaatgagttc
aatcagttcttggagtgttgtgagaacactgacgggcttcttgctggtgttattagtaaa
aaatcacttagtggaaatggacatacgtccaggccagtgaagatagaggaaaaagataga
gaacagaggcgtgaaatggaggggcctaaggaaaaggagagatacagggagtatctggca
aaatccatacaggaacttgacctttccaactgccaaagttgtaccccaagctatcggctt
ctgcctgatgattatccaataccttcggcaagtcaaagatcagcgcttggcgctcaagtg
ctgaatgatcactgggtatctgtgacttcaggaagtgaggattattcttttaagcacatg
cgccgaaatcagtatgaagagagcttattcagatgtgaggatgatagatttgaactggat
atgttgctagaatctgtgagttcaactgccaagcgtgccgaggaccttctgaacagcatt
aatgaaaataaaatcaatatggattctccaattcgtgtacaagaatactttactgttcta
aatttgaggtgcattgagcgtttatatggtgaccatggtcttgatgtaatggaaatatta
cataaaaaccctgctcttgcattgcctgtcattttaactcgcctgaagcagaagcaagaa
gagtggacaaagtgccgttctgactttaacaaagtttgggctgaaatttattcaaaaaac
cattataaatcacttgatcatcgcagcttctatttcaagcagcacgattcaaagaacttg
agtgtaaaatctttagtggctgaaatcaaggagttgaaagagaagaaccagaaagaggat
gacgttcttgtggctagtgttgctggtcacagacaacccttagctccacacctcaactat
gaatatttggatgttgacattcatgaagacctatataaacttatagaatattcatgtgaa
gagatgtgctcgactaaagaacagttaagtaaagtaatgaggctctggaccactttcgtg
gagccaatgtcgggcattcctcctcgacctaatggcaaagagggtactgatgatgctggt
aaagctcagaatcctgctgtaaactgcgttacgtcaagcattgctgaaagtggtggaagt
cccagagctgatactactgttaattctacacaacaaaaggctgccactgacagagatgag
aatggttcacctgaattaactaattcctgcagaaatggtttggcaaatggggaaacttca
gccaaagaacactcaagtcatttatctagagatgatttaaagaagaacactcaacctgga
ataaacatgctggcaattggagcccttgcatttgaagccgaaaataatcacagcaaaagc
aatactgaaggggcttcagcagcatctagacctagtagcgttgcagctggtgaggatctt
gaacctgaagctaatgcagatcttctgcacacatcagagggtggtgatgtaacaaaacat
gctctattagttaatggagtgcctacagatgagactaatgctagtagatatctcgaagaa
cttgctggtcccttgaaaattgagaaagaagaaggtgaattatcacctaatggtgatttt
gaggaggataattttgttgctcatggtgataatggcctaaaggctgttccagtggcgaag
catagtgttgaaagtggacagtatcagtctggaaaagggtcacaatgtaaggatgctgga
gttgaaaatggtgcagatgctgatgatgaggatggtgaaaatgcctctgaggctggtgat
gatgcatcaggcagtgagtctgcagatgatgaatgctcccgtggagagcacgaagaggaa
gaggttgagcttgatgaagttgatggtaaggctgagagcgaaggtgaagctgaagggatg
aatgatatgcatgcaggaggagatggcatgtctgttgcaacttccgaacagtttcttttt
acggtgaagcctcttgcaaaacacgtacctgcagtttttcctgaagaagatcaaaacatt
tctcgggttttttatgcaaatgatgatttctatgttcttttcagatttcatcaaatccta
tatgaaagaatactgtctgcgaaaacaaactcaacaggtgctgagttaaagcggaaaaac
tcaaaagaattgtgttcttcagatttatatgccagatttatgagtgcactgtacagtcta
cttgatggatcttctgacaatatgaagtttgaagatgaatgtcgagcaataataggaaac
cagtcatacgtattattcacattggacaagttaatatataaattggttaagcagcttcaa
gctgttgcaacagatgagatggataataagcttcttcaactgtttgagtatgaaaaatcc
cggaaacatgcaaggacaatggattcagtgtattacgaaaatgcgcgtgtcctccttcat
gaggagaatatttatcgattgaaatcctcatcttctccatctcgattatctattcagctg
atggacaatgtgattgaaaaacctgaggcttttgctgtttcaatggaacctaatttttca
gcttttttgcacaatgattttctatcagtctttcctgggaaaaaggaaccacatggtgtt
acgctaaagagaaacaagaaaaaatatgcaaacctagatgaatttgctgccatttgcatg
gctatggaaggtgttgaactggttaatggcttagagaacaagatagcttgcaattcatac
aagatttcttatgtgttggacaccgaagatttcttctgtcgtaggagaagaaattcgcca
ccaaaatgcggatcatataatactcaggcaagactacaacggttccataaatttttatcg
gcttcccaataa
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