Gossypium raimondii: 105779903
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Entry
105779903 CDS
T04129
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH6
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
gra
Gossypium raimondii
Pathway
gra03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gra00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
105779903
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gra03019
]
105779903
03012 Translation factors [BR:
gra03012
]
105779903
Enzymes [BR:
gra01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
105779903
Messenger RNA biogenesis [BR:
gra03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
105779903
Translation factors [BR:
gra03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
105779903
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
R3H
Helicase_C
DEAD
HA2_C
Ank_2
HA2_N
Ank_5
nSTAND3
ATPase
AAA_22
ResIII
AAA_19
Ank_3
AAA_11
Ank
Rad17
T2SSE
AAA_23
ABC_tran
Motif
Other DBs
NCBI-GeneID:
105779903
NCBI-ProteinID:
XP_012459353
UniProt:
A0A0D2V1I4
LinkDB
All DBs
Position
4:45760534..45770107
Genome browser
AA seq
1221 aa
AA seq
DB search
MGKKNPLAEIAVIRLNNILEKFRESEDEVYTFESNLTNKERAVVHKACRKMGMKSKSKGR
GSQRCVSVYKIKEKASSMTEKNPTNVSFSEGTKLVLQDLFAYYPPDDGELEEKVIGKYSG
KSAKIRRKKDDIFSKPLMNAAEIAKKVKTLASKREKHPNMRQIDEERSKLPISGFRDAIT
SAVECHQIILISGETGCGKTTQVPQFLLDYMWGKGEACKILCTQPRRISATSVAERIANE
RGESVGENVGYKIRLESKGGRHSSIVFCTNGVLLRVLVANSRSKREDISDMTHIIMDEIH
ERDCFCDFMLAIIRDILPSYPHLRVVLMSATLDSERFSQYFGGCPIIRVPGFTYPVRSFY
LEDVLSILKSTDDNHLIAANASDQDEDPELTEEDKIALDEAINLAWSSDDFDPLLDLISV
EGGSKVHNYQHSLTGLTPLMVFAGKGRVEEVCMLLSFGVDCSLISKDGKSALDWAEQENQ
QEAAEIIKNHIESSQKNIGGQHLLEKYIASGNPEIIDVVLIEQLLRKICIGSNEGAILVF
LPGWEDINRMKEKLLANPFFKDSSRFIIIPLHSMVPSADQKKVFNRPPLGCRKIVLSTNV
AESSVTIDDVVYVIDSGRMKEKNYDPYNNVSTLQSSWVSKANAKQREGRAGRCQPGICYH
LYSKLRAASMLDFQVPEIKRMPIEELCLQVKLLDPACKVEDFLRKTLDPPVSETVHNALR
VLQDIGAFTQDEELTELGEKLGYLPVHPLTCRMLFFAILMNCLDPALTLACASDFKDPFV
LPMRPNEKQKAAAARHELASLYGGQSDQLALIAAFECWKNAKRKGLERRFCSQYFVSSST
MNLLFGMRKQLQGELIRHGFIPDDVSSCSLNANHPGILHAVLVAGLYPMVGRILPVKQGK
RLIIEAANGSKVRLHTRSVNSKLVPKKPEDCPLIMYDEITRGDGGMFIRNCTVVGPFPLL
FLATEIAVAPIKGIVYDEDEDDDGADGDGDDDDDDGSDDGDGDACNTDGDEKLAVSKSGG
KEDKVMSSPDNSVMVVVDRWLSFRSTALDVAQIYCLRERLLAAILFKVMHPHEVLPPVLG
ASVYAIAWILSYDGLSGIPTPAESVDSLTSRVRSTDINKSMPVMKDTSPNPSRFLLSLLN
RSPFSCSSFQKGVKGPAVGAVTNGVESMSYNQQAPVMSAGMSLDQAALQDPTSVASGSGA
SKSQGSGDDSCKRQRGKRSIS
NT seq
3666 nt
NT seq
+upstream
nt +downstream
nt
atgggaaagaagaaccccttagctgaaatcgccgttatccgattaaacaacatacttgag
aaatttcgtgaatcagaagatgaagtgtatacctttgaatccaaccttactaacaaagaa
cgcgcagtggtgcacaaggcatgccggaaaatgggtatgaaatccaaaagtaaagggcgt
gggagccagagatgtgtctctgtctataaaatcaaagagaaagccagcagtatgacagag
aagaatccaactaacgtgtcattttcggaggggacaaaattggttttgcaggacttattt
gcatattatccaccagatgatggagagcttgaagagaaggtaattggaaaatatagcgga
aaatctgctaaaatacgaagaaagaaagatgatattttctcgaagccattgatgaatgct
gcggagattgcaaagaaggttaaaacacttgcatctaagagagagaagcatccaaacatg
agacagattgatgaagagaggtcaaagcttccaatttctgggtttagggatgccattaca
tctgcagtagaatgtcaccagattatcctcatttctggcgagactgggtgtggcaagaca
acacaggttccacaatttcttttggactatatgtgggggaaaggtgaggcctgtaaaata
ctgtgtactcagcctcggcgtatatcagctacatcagtggctgagagaattgctaatgaa
agaggggaaagtgttggagaaaatgttggatacaagattcgcttggaaagtaaaggcggt
cgacactcatcaatcgtcttctgcacgaatggggtattattgagagtgctggttgcaaac
agtagatcaaagagagaagacatctctgacatgactcacattattatggatgaaattcat
gaaagggactgcttctgtgatttcatgttggcaattatcagggatatacttccttcgtac
cctcatctacgggtggtactgatgagtgctactcttgattctgaacggttttcacaatat
tttggtggttgcccaattatccgtgttcctgggtttacatatcctgtaagaagtttctat
ttggaggatgtgctttctatcctgaaatccacagacgataatcatcttattgcagctaat
gcaagtgaccaggatgaagacccagaattaactgaagaagataagatcgcattagatgaa
gctattaatttggcttggtcaagtgatgactttgatccacttttagatttgatttctgtt
gaaggagggtcaaaggttcataattaccagcattctttgactggactaacgccactaatg
gtgtttgctggaaagggtagagtggaggaagtttgcatgctcctctcgtttggtgtagac
tgcagtctaatctccaaggacgggaagagtgctttggattgggctgagcaggaaaaccag
caggaagctgctgaaataattaaaaatcatattgaaagttcccaaaaaaatattggggga
cagcacttactcgaaaagtatatagcatcaggtaatccagaaatcattgatgttgttctt
attgaacaattactaagaaagatatgtattggttcaaatgaaggagccatccttgttttc
cttcctgggtgggaggatataaatagaatgaaagagaaattgctcgccaacccctttttt
aaagattcttccagatttattataatacctttgcattcaatggttccatctgctgatcaa
aagaaggtctttaatcgtccacctttgggctgccgcaaaatcgttctttcaaccaatgtt
gccgaaagttccgttacaatcgatgatgttgtctatgttatagatagtggtagaatgaaa
gagaaaaactatgatccatataataatgtatcaacccttcagtcttcatgggtctccaaa
gcaaatgctaagcagagagaggggcgagctggtcgatgtcaacctggaatttgttatcat
ctttattcaaaacttcgagcagcttctatgcttgactttcaagttccagaaattaagaga
atgccaattgaagagctctgtttacaggtgaaattgcttgacccagcttgcaaagtagag
gatttcttgcgaaagacattggaccctcctgtttctgaaactgtacataatgcacttaga
gtccttcaagatattggggctttcacgcaagatgaggaactgacagaacttggagagaag
cttggttatcttcctgttcatccattgacatgcaggatgcttttctttgccatattgatg
aattgccttgatccggcattgacactagcatgtgcatcagacttcaaggatccatttgtc
cttcccatgcgaccaaatgaaaagcagaaggctgccgctgccaggcatgagcttgcgtct
ctgtatggtgggcaaagtgatcagctggcactcatagctgcgtttgagtgctggaagaat
gctaaaagaaagggtctagagcgacgtttttgttcacaatactttgtctcatcaagcacc
atgaacttgctgtttggcatgcgtaagcagctccagggtgaactaatacggcatgggttt
attccagatgatgtctcaagttgtagtctaaatgcaaatcaccctggaatactccatgca
gtccttgtggctggtttgtatccaatggtggggaggatactccctgtaaaacagggtaaa
cgattaattatagaggctgccaatggcagtaaagttcggttacacactcgctctgttaat
tcaaagttagtacccaagaaacccgaagattgccccttgattatgtatgatgaaataaca
cgtggggatgggggtatgttcataaggaactgtactgttgttgggccatttccattgtta
tttcttgcaacagagattgcagtggctcctataaaaggcattgtttatgatgaagatgaa
gatgatgatggggctgatggtgatggtgatgatgatgatgatgatggaagtgatgatggt
gatggtgatgcatgcaacactgatggagatgaaaagttggctgttagtaagtcaggtgga
aaagaagataaggtcatgtcctctcccgataattctgttatggtggttgttgatcgctgg
ctatcattcagatcaacagcccttgatgttgctcaaatttactgcttgagagaacgatta
ttggcagcaatcttattcaaggtaatgcatccacacgaagttcttcctcctgttctcggg
gcgtctgtatatgcaatagcttggattctatcttatgatgggttatcaggcatcccaacg
ccagcagaatctgtagattcactgacttcgagggtgcgttctactgatatcaacaaatct
atgccagtgatgaaagatacaagtcccaatccaagtaggttccttttgtcacttttgaac
cgaagcccattcagctgttcaagtttccagaaaggtgttaagggccctgcagtaggggct
gtaacaaatggagttgagtccatgagttacaaccaacaggcacctgtaatgtcagctgga
atgagcttagatcaagctgcgttgcaggaccctacgtcagttgcttccggttcaggtgcg
tctaaatcacagggttctggagacgattcttgcaagcgacaacgcgggaagaggtctata
tcttga
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