Gossypium raimondii: 105779938
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Entry
105779938 CDS
T04129
Name
(RefSeq) RNA polymerase II C-terminal domain phosphatase-like 3
KO
K18999
RNA polymerase II C-terminal domain phosphatase-like 3/4 [EC:
3.1.3.16
]
Organism
gra
Gossypium raimondii
Brite
KEGG Orthology (KO) [BR:
gra00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
gra01009
]
105779938
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gra03021
]
105779938
Enzymes [BR:
gra01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.3 Phosphoric-monoester hydrolases
3.1.3.16 protein-serine/threonine phosphatase
105779938
Protein phosphatases and associated proteins [BR:
gra01009
]
HAD phosphatases
Fcp/Scp phosphatases
105779938
Transcription machinery [BR:
gra03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Others
105779938
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NIF
BRCT
PTCB-BRCT
RTT107_BRCT_5
Motif
Other DBs
NCBI-GeneID:
105779938
NCBI-ProteinID:
XP_012459417
UniProt:
A0A0D2V4M9
LinkDB
All DBs
Position
4:6559515..6565820
Genome browser
AA seq
1272 aa
AA seq
DB search
MGKDEIKLEDVEEGEISDSASIEEISEEDFNKQEVKILKESKSSKGGEANSNSRVWTMQD
LCKYPSVIRGYASGLYNFAWAQAVQNKPLNDIFVKELEQQPQQDENNNSKRSSPSSSVAS
VNSKEEKGYSGNSADRVVIDDDTGDEMEEDKIVNLDKEEGELEEGEIDLDSEPVKERVLS
SEDGNVGISDELEKRVNLIRGVLEGITVIEAEKSFEVVCSRLQNALESLQGLVFEYGVPT
KDTLIELALGAVNSAFVALNSNLKEQNVSILSRLLSVVKGFDPPLFPLDKMKEIEVMLLS
LNSPARAIDSEKEIKIVNKKDPDALAENVGHDLTVTNKLPLSVDSEIHNMPNILTEALKP
GVPNFRNKGLSLPLLDLHKDHDADSLPSPTRETTPCLPVLRPLTTGDGMVRSGFMMAKGL
PDAERNKMHPYETDALKAFSSYQRKFGRGSFFSSDRLPSPTPSEESGDEGCDTGGEVSSS
SSIGNFKPNLPVMGHPIVSSAPHIDSASSTSSMQGQFTTQNATPVTVSSASNILSKASAK
SRDPRLRFANSNVSALDLNQRPLHNASKVPPVSGIMDPRKKKSTEEPVLDGPAPKRQKNE
LENFGVRDVQAVSGNGGWLEDTDNCESQITNRNQTMETLDSNSRKMEHGVTCSSTLSGKT
NTTVNKNEQVPLTGMSNPSLPALLKDIAVNPTMLINILKMGQQQRLPSESQQKTPDPLKN
TLYQPSSNPVLGVIPPANVIPSPSVNVVPSSSSGTLSKPAGNLQGPPLDESCKIRMKPRD
PRRVLHGNVLQKSGSVGPDQLKTNGTSPASSTQGSKDNMNAQKQLENQIEAKPIQCQFVP
PPDIAQQFTQSLKNIAGMMSGPQSFAGLPAVSQNLVSQPIQVKSETADKNTKGSNSEDQQ
TGTGTAPEAGVTCPPPSQNAWGDVEHLFEKYDDRQKAAIQRERARRIEEQKKMFAARKLC
LVLDLDHTLLNSAKFIEVDPVHEEILRKKEEQDREKPQRHLFRFHHMGMWTKLRPGIWNF
LEKASKLYELHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPRSKD
LEGVLGMESSVVIIDDSVRVWPHNKLNLIVVERYTYFPCSRRQFGLLGPSLLEIDHDERP
EDGTLASSLAVIERIHQNFFSHQNLDDLDVRNILATEQRKILSGCRIVFSRVFPVGEANP
HLHPLWQTAEQFGAVCTNQIDEHVTHVVANSLGTDKVNWALSTGKFVVHPGWVEASALLY
RRANEHDFAIKP
NT seq
3819 nt
NT seq
+upstream
nt +downstream
nt
atgggaaaagatgaaatcaaattggaggatgttgaagaaggtgaaatttcggattcggct
tcgatagaggagatcagtgaggaagattttaacaagcaagaggttaagattttgaaggaa
tcgaaatcgtcgaaaggaggggaagcgaattcgaattctagagtttggacaatgcaggat
ctgtgcaaatacccttcggttattcgagggtatgcttcgggtttgtataattttgcttgg
gcacaagcagttcagaacaaacctctcaatgatatttttgttaaggagcttgaacaacaa
ccacaacaagacgagaacaacaactccaagcgatcgtcaccctcgtcttcggtggcttct
gtaaatagcaaagaggagaagggctatagcggaaattcagctgatagagtcgtgattgac
gatgatactggggacgagatggaggaagacaagattgtgaatcttgacaaagaagaaggg
gagttggaggagggggagattgatttggattcagaaccagtgaaagaaagggttttgagt
agtgaggatggtaatgttggtatctcggatgagttggaaaagcgagttaacctgattcgg
ggagtactggaagggattactgtgattgaagcagagaaatcgttcgaagtagtttgttcc
agactgcagaatgctttggagagcttgcaaggattggtatttgaatatggtgttcccaca
aaggacacccttattgaactggcattaggagcagttaattctgcattcgttgctctaaat
agtaatttgaaggagcagaatgtgtccattttatcaaggctactttctgtcgtaaagggt
tttgatcctcctctctttcctcttgacaagatgaaagagatagaggtgatgctgctatcg
ctgaattcccctgctagagcaattgactcagagaaagagattaagattgttaataagaag
gatcctgatgctttagctgaaaatgttggtcatgatttgaccgtcacaaataagttgcct
ttatctgttgattccgaaattcataatatgccaaatattttaacagaagctttaaagcct
ggagtacctaattttaggaacaaaggtctttcactacccctgctagaccttcacaaggat
catgatgcagacagccttccttcgcctactcgagaaacaacaccatgtttacctgtactc
aggccattgactactggagatggtatggttagatctggatttatgatggctaagggtttg
cctgatgcagaacgtaataaaatgcatccttatgaaacggatgccctcaaagccttttcc
agctatcaaagaaaatttggtcgaggttctttcttttcaagtgatagacttcctagccca
accccttctgaagaatccggtgatgagggttgtgatactggtggggaggtttctagttcc
tccagcattggtaattttaaaccaaatctgcctgttatggggcatccaattgtttcctcg
gcacctcatattgatagtgccagttcgacttccagcatgcagggacagtttacaactcaa
aatgccacacctgtgactgtgagttctgcatctaatatactgtcaaaagcttcagcaaaa
agcagagaccctagacttcggtttgccaactctaatgtgagtgctttggatctaaaccaa
cggcccttgcataatgcatctaaagtgccacctgttagtggaataatggatccaagaaag
aaaaagagcacggaagaacctgttttagatggtcctgcacccaaaagacagaagaacgag
ttggaaaattttggggttagggatgttcaagctgtgtctggaaatggtgggtggttagag
gacactgataattgtgagtctcagataacaaacagaaaccaaaccatggagactttggat
tccaattcccggaaaatggaacatggagtaacttgttcaagtactctaagtggaaaaacc
aatacgactgtcaacaaaaatgagcaggtgccactgacaggcatgagtaacccttccttg
cctgctttgttgaaagatattgcagtaaatcctaccatgctgataaatatacttaagatg
ggacaacagcagagattaccatctgaatcccagcagaaaactcctgatcctctaaaaaat
acattgtatcagccaagctcaaatccagttctgggagtcattcccccagcaaatgttatt
ccctcgccctctgttaacgttgttccctcaagctcatctggtactttgtcaaaacctgca
ggaaatcttcagggtcctcctttggatgagtcttgcaaaattcgcatgaaacctcgtgat
ccccgccgtgttctccatggcaacgtgcttcaaaagagcggtagtgtaggacctgatcaa
ttaaaaactaatgggacctcccctgcatcaagtacccagggaagcaaggataatatgaat
gcccaaaaacagcttgagaatcagatagaagctaagccaatacaatgtcagtttgttcca
cccccagatattgcccagcaatttacccaaagtctaaaaaatattgctggcatgatgtct
ggtccgcaatcatttgccggtctgccagcagtgtcccagaatttagtctcccaaccaata
caagtgaagtctgaaactgcggataagaacacaaaaggttctaattctgaggatcagcag
actgggactggtacagcgcctgaagcaggtgtaacatgtcctcctccttcacagaatgca
tggggagatgtcgaacatctctttgaaaaatatgatgaccggcaaaaggcagctatccag
agagaaagggcaaggaggatagaagagcaaaagaaaatgtttgctgctcgcaaactctgt
cttgtcctggatctggatcatacacttcttaattcagccaaatttattgaagtagaccca
gtacatgaagaaatcttaagaaagaaagaggaacaggatcgtgaaaaaccacagagacat
cttttccgctttcaccatatgggaatgtggaccaaattgcgacctggaatctggaatttc
ttagagaaggctagtaagttgtatgagctgcatctttatacgatgggcaacaaactttat
gctacggagatggcaaaagtgcttgacccaaaaggggttttgtttgctggacgagttatt
tctaggggtgatgatggtgatccctttgatggtgatgagagggttccccggagtaaggat
cttgaaggggttctgggtatggaatcatctgtggttatcattgatgactctgtgagagtc
tggcctcataataaacttaacttgattgtagtagagaggtatacttattttccttgtagt
aggcgccaatttggtcttttaggtccatctcttcttgagatagaccatgatgagcgacct
gaagatgggactttggcttcttctttggcggttattgagagaatacaccagaatttcttt
tcacatcagaatttagatgatctggatgttagaaatatcctagcaacagaacaaaggaag
attttgtctggttgtcgtatagtatttagcagggtgtttcctgtaggtgaagccaatcct
cacctacatccactgtggcagacagcggagcaatttggggctgtgtgcacaaatcagata
gatgagcatgttacacatgtggtggctaactctctcggaacagacaaggtgaattgggct
ctatctactggaaaatttgttgttcacccgggctgggtggaagcatcagcactgctctat
aggagggcaaatgagcatgactttgccattaaaccataa
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