Gossypium raimondii: 105780006
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Entry
105780006 CDS
T04129
Name
(RefSeq) pre-mRNA-processing protein 40A
KO
K12821
pre-mRNA-processing factor 40
Organism
gra
Gossypium raimondii
Pathway
gra03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
gra00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
105780006
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
gra03041
]
105780006
Spliceosome [BR:
gra03041
]
Complex A
U1 snRNP components
U1 related factors
105780006
Complex B
105780006
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
FF
WW
WW_TCERG1
FF_RHG35_4th
WW_2
Motif
Other DBs
NCBI-GeneID:
105780006
NCBI-ProteinID:
XP_012459513
UniProt:
A0A0D2S3C8
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All DBs
Position
4:complement(3300840..3314382)
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AA seq
994 aa
AA seq
DB search
MDPSQNFPPPMSGQFRPVVPSQQPQQFVSVPPQQFQPVGRGVTVMNAGFPSQTPQPQIPQ
VMQQLPARPGQPGHILPPPPSVSLPAAQPNLHVNPGASVPQPNIQAPNNYFPGVPASHLS
SSYTFAPSSYGQVTVSHNAMAQYQPMAQLQAPNVPVGGQVGIHVSQSTSVTSAQQIGEQP
SASTATIPPKPTEEALTDWIEHTSANGRRYYYNKKTRQSSWEKPLELMTPIERADASTNW
KEYTSPDGRKYYYNKVTNLSTWSLPEELKLAREQVEMASAKGPLSDVSSHIPAPVPPASK
AQSGADTPSTIIQGASSSPVPVAPVPSSSKIESVVVSGSDLPVATSSTVTNVDVVQIVED
TITPSVAVSESSEVSLSVADAATTLMNNISKVSSLDMVSSEGVSTQNADETVKDVVVSEK
INNALEEKAIDQESLTYASKQEAKDAFKALLESANVGSDWTWDQAMRVIINDKRYGALRT
LGERKQAFNEFLGQKKKQDAEERRIKQKKAREEYKKMLEECLELTSSTRWSKAVTMFEND
ERYKAVEREKDRKDFFENYIDELRQKERVKAQEQRKQNVMEYRRFLESCDFIKANSQWRK
VQDRLETDERCSRLDKIDRLEIFQEYIRDLEKEEEEQRRIQKEELRKTERKNRDEFRKLV
EGHVAAGTLTAKTHWRDYCMMVKDSPPFLAVASNTSGPTPKDLFEDVAEELQKQYDDDKA
RVKDAVKLRKICLASTWTLEDLKAAILEDISSPPISDVNLKLIFEELLERVKEKEEKEAK
KRKRLADDFFDLLHSMKEITSSSAWEDCKHLLESSQEFSSIGDEDICKGIFDEYVKQLKG
DAKEKERRRKEDKAKKEKERDERERRKEKHGRDKERGYEREKEEHLREEPSEAHGDISEV
HDENENKRSGKEDSKKHRKRHQSSVDNSNETEKDRTKTHRHSSDRRKSKKHASTPESDNE
SRHKRHKRDHRNGSRRNLDPEELEDGEFGERESQ
NT seq
2985 nt
NT seq
+upstream
nt +downstream
nt
atggacccttctcaaaattttcccccacctatgtctggtcagttccgacctgttgttcca
tctcagcagccacaacaatttgtttcagtgcctcctcagcagtttcaacccgttggcaga
ggagttactgtgatgaatgctggatttccttctcagaccccacaaccccaaattcctcaa
gtaatgcagcaattacctgctagaccaggccagccaggccatattctacctccaccaccc
tcagtttcattgccagctgctcagcctaatctacatgttaatccaggggcatcggtgcct
caacctaatattcaagcgccaaacaactattttcctggggtcccagcatcacacctctct
tcatcatatacctttgcaccgtcttcttatggccaggtaacggtgtctcataatgccatg
gctcaatatcaacccatggcacaattgcaggcacctaatgttcctgttggaggccaggtg
ggtatccatgtgagtcagagtacttctgtcacatccgcacagcaaattggtgaacaacct
tctgcttccacagctactattccgccgaagcccactgaagaggctttaacagactggatt
gaacacacttctgcaaatggacgaaggtattattacaataagaagacacggcaatctagt
tgggagaagccattggaattgatgacaccgattgagagggcggatgcatcgactaactgg
aaagaatatactagtcctgatggaagaaagtattactacaacaaggttaccaatctatca
acatggtcactccctgaagagctgaagttggctcgtgaacaagtagaaatggcgtctgcc
aaaggaccactgtcagatgtttcttctcatattccagctcctgtacctcctgcaagtaaa
gcacaatctggtgctgatacaccgtctacaataattcaaggagcttcctcaagtccggtt
ccagtggcaccagttccttctagtagtaaaattgaatctgtggtggtttctgggtcagat
ttacctgttgcaacttcttcaacagtgaccaatgtagatgtggttcagatagttgaggat
actatcacaccatctgttgctgtttcagaaagttctgaagtttctctctcagtggctgat
gctgctacgacactgatgaataatatcagcaaagtttcttctttggatatggttagttct
gaaggagtttcaacacaaaatgcagatgaaactgtaaaagatgtggtagtgagtgagaaa
attaacaatgcattggaagagaaagcaattgatcaagaatctttgacttatgccagcaag
caagaggctaaagatgcattcaaagctcttttggagtctgcaaatgttggttctgactgg
acatgggatcaggccatgagagtaataataaacgacaaaagatatggtgctttgagaaca
cttggggagagaaagcaagcttttaatgagtttttgggtcaaaagaaaaaacaggatgct
gaggaaaggcggattaaacagaaaaaagcccgggaagaatataaaaaaatgttagaagag
tgcttggagttgacgtcatccacaagatggagcaaagcagttactatgttcgaaaatgat
gagaggtataaagctgttgaacgggagaaggataggaaggatttttttgagaattacatc
gatgaactcaggcaaaaggaacgggtgaaggcacaggagcagcgtaagcagaatgttatg
gagtacagaagatttttggaatcttgtgacttcattaaggcaaatagccagtggcgaaaa
gttcaggaccgcttagagactgacgaaagatgttcacgtcttgacaaaattgaccgcttg
gaaatatttcaggaatatatacgtgacttagagaaggaagaagaggagcagaggaggata
caaaaggaagaactgaggaagacagagcgtaaaaatcgtgatgagttccgcaagttggtg
gaaggacatgttgctgcaggaacacttaccgccaaaacccattggcgtgattattgcatg
atggttaaagattcgcctcccttcctagcagttgcatccaacacctcaggtccaactcca
aaagatttgtttgaagatgtagctgaggagcttcagaaacagtacgatgatgataaagct
cgagtaaaggatgcagtgaagttgagaaagatttgtttggcatcaacttggactctagaa
gacttgaaggctgccattttggaggatattagctctccacctatatcggatgttaacttg
aagctgatttttgaggaattacttgaaagggtcaaggagaaggaggagaaagaagctaag
aagcgtaaacgtcttgctgatgacttctttgatttattgcattctatgaaggagattaca
tcatcttcagcatgggaggattgcaaacatcttcttgaaagtagtcaggaattcagttcc
attggggatgaagacatctgcaaggggatatttgatgaatacgtaaaacagttgaaagga
gatgcaaaagagaaggaacgaagacggaaagaagacaaggcaaagaaggaaaaggagaga
gatgagagggagaggaggaaggagaagcatggaagggacaaagagagaggatacgagaga
gaaaaggaggaacacttgagggaggaaccttcagaagcacatggtgatataagtgaagtt
catgatgaaaatgaaaataaacggtcaggaaaagaagacagcaagaaacatcgtaaacga
catcaaagttcagtggacaattcaaacgaaactgaaaaagatcggactaagacccacagg
catagcagtgatcgcagaaaatcaaaaaagcacgcatcgacacctgaatctgataacgaa
agcaggcataagagacacaagcgagaccatcggaacggttcacgtagaaatcttgacccc
gaggaacttgaagacggagaatttggtgaaagggaaagtcagtag
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