Gossypium raimondii: 105780049
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Entry
105780049 CDS
T04129
Name
(RefSeq) spliceosome-associated protein 130 A
KO
K12830
splicing factor 3B subunit 3
Organism
gra
Gossypium raimondii
Pathway
gra03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
gra00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
105780049
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gra03021
]
105780049
03041 Spliceosome [BR:
gra03041
]
105780049
03036 Chromosome and associated proteins [BR:
gra03036
]
105780049
Transcription machinery [BR:
gra03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
105780049
Spliceosome [BR:
gra03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
105780049
Complex B
105780049
Complex C
U2 SnRNP specific factors
105780049
Chromosome and associated proteins [BR:
gra03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
105780049
TFTC complex
105780049
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_1st
Beta-prop_RSE1_2nd
CPSF_A
Beta-prop_EML_2
Beta-prop_BBS7
WDR55
Motif
Other DBs
NCBI-GeneID:
105780049
NCBI-ProteinID:
XP_012459597
UniProt:
A0A0D2V351
LinkDB
All DBs
Position
4:40624439..40629328
Genome browser
AA seq
1214 aa
AA seq
DB search
MYLYNLTLQQATGIVSAINGNFSSGKVQEIVVARGKILSLLRPDDLGKLQTLHSVEIFGC
IRSLAQFRLTGAQKDYIVVGSDSGRIVILEYNKEKNVFDKVHQETFGKSGCRRIVPGQYL
AIDPKGRAVMIGACEKQKLVYVLNRDTAARLTISSPLEAHKSHTIVYSICGVDCGFDNPI
FASIELDYSEADQDSTGQAANEAQKHLTFYELDLGLNHVSRKWSEQVDNGANMLVTVPGG
GDGPSGVLVCAENFVIYKNQGHPDVRAVIPRRADLPAERGVLIVSAATHKQKSMFFFLLQ
TEYGDIFKVTLEHGNEGVTELKIKYFDTIPVTASMCVLKTGFLFAASEFGNHALYQFQAI
GDDPDVESSSSTLMETEEGFQPVFFQPRGLKNLVRIDQAESLMPIMDMKISNLFEEETPQ
IFSLCGRGPRSSLRILRPGLAISEMAVSQLPGVPSAVWTVKKNVSDAFDAYIVVSFANAT
LVLSIGETVEEVSDSGFLDTTPSLAVSLIGDDSLMQVHPNGIRHIREDGRINEWRTPGKR
TIVKVGSNGLQVVIALSGGELIYFEVDMTGQLMEVEKHEMSGDVACLDIAPVPEGRQRSR
FLAVGSYDNTIRILSLDPDDCMQILSVQSVSSPPESLLFLEVKASVGGEDGADHPANLFL
NAGLQNGVLFRTVVDMVTGQLSDSRSRFLGLRPPKLFSVKVRGRPAMLCLSSRPWLGYIH
QGHFLLTPLSYETLEFAASFSSDQCAEGVVAVAGDALRVFTIERLGETFNETAIPLRYTP
RRFVMQPKRKLLVIIESDQGSYTAEEREAARKECFEAAGMGENGNGNVNEMENGGDDEDK
EDPLSDEQYGYPKAESNKWVSCIRILDPRTATTTCLLELQDSEAAFSVCTVNFHDKEYGA
LLAVGTAKGLQFWPKKSLVAGFIHIYRFLEDGRSLELLHKTQVEGVPLALCQFQGRLLAG
IGSVLRLYDLGKKRLLRKCENKLFPNTIVSIHTYRDRIYVGDIQESFHFCKYRRDENQLY
IFADDVVPRWLTASYHIDFDTMAGADKFGNVYFVRLPQDVSDEIEEDPTGGKIKWEQGRL
NGAPNKAEEIVQFHIGDVVTCLQKASLIPGGGECVLYGTVMGSLGALLPFTSRDDVDFFS
HLEMHMRQEHPPLCGRDHMAYRSAYFPVKDVIDGDLCEQFPTLPLDLQRKIADELDRTPG
EILKKLEEIRNKII
NT seq
3645 nt
NT seq
+upstream
nt +downstream
nt
atgtatctttacaacttaactcttcaacaagccaccggcatcgtctccgccataaacgga
aacttctccagtggcaaagtccaagaaatcgtcgtcgcccgtggcaagatcctttccctt
ctccgtcccgacgatctcggtaagctccaaacacttcactctgtcgaaatctttggctgc
atacgttctttagctcaattccggctaaccggagcccaaaaggactatattgtagtaggg
tcggattctggtcggatcgttatccttgaatacaacaaagaaaagaacgtttttgataaa
gttcaccaagaaacttttgggaaatctggatgtcgccggattgtcccgggtcagtactta
gctattgaccctaaaggaagagctgtaatgattggtgcttgtgagaaacagaaattagtt
tatgttttgaatagagatactgccgctaggttaaccatttcgtcacctttagaagctcat
aagtcacatactattgtttattcgatttgcggtgttgattgtggcttcgataaccctatt
ttcgcttccattgaattggattactcggaggctgatcaggattccacgggacaggctgct
aatgaggcgcagaagcatttgacgttttatgaacttgatttagggcttaaccatgtgtct
aggaagtggtcagaacaagttgataatggggcaaatatgttggtcacggtacctggtggt
ggtgatgggccgagtggggttttggtttgtgcagaaaacttcgttatttataagaaccag
gggcatccagatgttagggccgtcattcctagacgtgctgacttgccggcagaacgtggt
gttttgattgtttctgcggctactcataagcagaaatctatgttcttcttccttttgcag
acagaatatggggacatttttaaggttacactggaacatggaaatgaaggagttacagaa
ttaaagattaaatattttgatacaattcctgttacagcatcaatgtgtgtgttgaagact
ggcttcctatttgcagcttcggagtttggaaatcatgctttatatcagtttcaggctatt
ggagatgaccctgatgttgagtcctcgtcatctactttgatggaaactgaagaaggtttc
cagccagtgtttttccagcctagagggcttaagaatctagttagaattgaccaagctgag
agcctgatgccaataatggatatgaaaatttctaatctctttgaggaagaaacacctcag
atattttcactctgtgggcgtggtcctcgttcatctttgaggatattaaggcccggtttg
gccatcagtgagatggctgtctcacagcttcctggtgtcccgagtgctgtgtggacggtg
aaaaagaatgttagtgatgcctttgatgcgtacattgtagtgtcatttgccaatgctact
cttgttctttccattggtgaaacggttgaagaagttagtgatagtggttttcttgatacc
actccttctcttgctgtttccttgattggtgatgattcactaatgcaagtccaccctaat
ggtattaggcatataagggaagatgggcgtattaatgagtggagaactcctgggaaaagg
acaattgttaaggttggctcaaatgggcttcaagtggttattgcattgagtggaggggag
cttatatactttgaggtggatatgactgggcaattaatggaagtggagaagcatgaaatg
tctggagatgtggcttgtcttgacattgcccctgttcctgaaggaagacagagatcccgt
tttcttgcagtgggttcatatgataatacaattcgtatattgtctttggatcctgatgat
tgtatgcagattctgagtgttcagagtgtgtcctcgcctcctgagtctctccttttcctt
gaagttaaggcatcagttggtggggaggatggtgctgatcaccctgccaatcttttcctt
aatgctggtttgcagaacggagtgttgttccgaacggtagtagatatggttacagggcag
ctctctgactcccgttcacggttcttagggctgagacccccaaagttgttctctgttaaa
gtgagaggccgacctgcaatgctttgcttgtccagtcggccatggcttggttatattcat
caaggacattttctgctaactccgctttcttatgagacacttgaatttgctgcctcattt
tcatctgatcagtgtgctgaaggtgttgttgctgttgctggggatgcattgagggttttc
accatcgagcgtcttggggaaacctttaatgagactgctattcctttgaggtatactcct
aggaggtttgtcatgcaaccaaagaggaaattattggtaattatcgagagcgaccaagga
tcatatactgcagaagagcgtgaagctgcgagaaaggagtgctttgaggctgctggaatg
ggtgaaaatggtaatggtaatgtgaatgaaatggaaaatggcggtgatgacgaggacaaa
gaggatcccctctctgatgagcagtatggttatccaaaggcagagtcgaacaagtgggtt
tcttgcattagaattcttgatccgaggactgctaccacaacttgtcttctggagcttcag
gatagtgaagctgctttcagtgtatgcaccgtgaatttccatgataaagagtatggagct
ctcttggctgttggaactgccaagggcctgcagttttggccgaaaaaaagcttagttgcg
ggatttattcatatttataggtttctcgaagatggcaggtcacttgaacttttgcacaag
acacaagtggaaggtgttcctcttgctttatgccagtttcagggaaggttacttgctgga
ataggatccgtgctccgattgtatgacttggggaaaaagagattgcttagaaagtgtgaa
aataagcttttccctaacactattgtctctatccacacttaccgtgatcgaatatatgtt
ggggacatccaagagtcattccatttttgcaagtacagaagggatgaaaatcaactgtat
atttttgctgatgatgttgttccaagatggcttactgcatcataccatatagatttcgac
accatggctggtgcagacaagtttgggaatgtctattttgtgcggctaccacaagatgta
tcagatgagatagaagaagacccaaccggtggaaagataaaatgggaacagggaaggctc
aatggagctcctaacaaggcagaggagatcgttcagttccatattggagatgtggtaact
tgcttgcagaaggcatctctgataccaggtggtggagagtgtgttctttatggtacagta
atggggagcttgggggcattgcttccattcacttcccgtgatgatgttgacttcttttct
cacctagagatgcatatgagacaggagcacccgcccttgtgtggacgagatcatatggct
tatagatctgcatatttccctgtcaaggacgttattgatggggatttgtgtgagcagttt
cctaccctacctttggatttgcagagaaaaattgcagatgagttggatcggactccaggg
gagatattgaagaaacttgaagaaatccgaaacaagattatctga
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integrated database retrieval system
