Gossypium raimondii: 105781864
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Entry
105781864 CDS
T04129
Name
(RefSeq) poly(A)-specific ribonuclease PARN isoform X1
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
gra
Gossypium raimondii
Pathway
gra03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gra00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
105781864
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gra03019
]
105781864
Enzymes [BR:
gra01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
105781864
Messenger RNA biogenesis [BR:
gra03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
105781864
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
105781864
NCBI-ProteinID:
XP_012461846
UniProt:
A0A0D2QAJ8
LinkDB
All DBs
Position
1:complement(10776479..10780580)
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AA seq
718 aa
AA seq
DB search
MNTTRHWPKRAFILSRALSRAFSDTPSPTFPLKHVTRSNFDSALVELRSHVRAADFVAID
MEMTGVTSAPWRESFEFDRFDIRYLKVKDSAEKFAVLQFGVCPFRWDSLKQSFIAHPHNF
FVFPRQEIPLDRTSYEFLCQTTSMDFLAKYQFDFNACIHEGISYLSRGQEDEARKRLISP
KGDQLTHLSHNLRETMDLPLVRVADVLFTERMKKRLGEWRDDLLQNRVGGPQEEKVPDDL
NQQFRTVFFKMRPALSLDGFTSHQLSLIRMVTRKHFKDLTYVCFNGESTSEELVVYTDSE
SDKARLMEEVKNDHQRSAEMKINAAVGFRYVIDLLSSENKLIVGHNCILDIAHVHSKFLA
PLPSTAEEFVSCVNKYFPSIIDTKILLNADYTLQRKMKRSSTSLSSAFSLLCPEIAHGFT
RNVLSYEPCVKVEVHVDEMRSSNWNSGAKHEAGYDAFMTGCVFAQACSHLGIDFQLHSPS
ENLTQNEKLQKHMNLLYLSWINGDIIDLRTGNRSAELSGSNMIRKPYRKILFKNIVLLWG
FPSKLKPSMIRDCICKTLGPSSVISTYCIDQTAVFVQFSKAELASDFLNLKDTLEQSNDA
ISHLHPLSQLLEGGNTHAASYETYKEICASPISKVLFADQAEAVGIKWKTELLPSDKEES
HDNTRSHLESAMDSPQAVQKSKTRNTEDVVNDSSNKRFCDDIIDSFLKVEKIRRTTNL
NT seq
2157 nt
NT seq
+upstream
nt +downstream
nt
atgaacaccacaagacactggcccaagagggcctttatcctctcacgtgcgctatcacgt
gccttttccgacaccccttccccgacgttccctctgaagcacgtgacacgatccaacttc
gactcggccctcgttgaactccgttcgcacgttcgagctgccgatttcgtggccatcgac
atggaaatgacgggggtaactagcgcgccctggagggaatctttcgagtttgatcggttt
gatattcggtatctcaaagtcaaagattccgctgagaaattcgctgttcttcagttcggc
gtttgcccttttcgttgggactcacttaagcagtcgttcattgctcacccgcacaatttc
tttgtatttcctcgtcaagaaattccacttgataggacctcttatgaattcctttgccaa
acgacatcaatggattttttggctaaatatcagtttgatttcaacgcttgcatacatgaa
ggtatatcttacttgtccagaggacaagaagatgaggctcgtaaaagattaatatcacct
aaaggagatcagttaacgcatctgtctcataatttaagagaaactatggacttaccgttg
gtccgagtggctgatgttctcttcacggaaagaatgaagaaaagattgggtgaatggcgt
gatgatttattacagaatagggtaggagggcctcaagaagaaaaggttcctgatgactta
aatcaacaatttcggacagttttcttcaagatgcgtcctgctctgagtttggatggattc
acttctcaccaacttagtctgatccgaatggtcacaaggaagcatttcaaagatcttact
tatgtttgttttaacggtgaaagtacttcagaagagttagtagtttatacagactcagag
agtgataaagcgagacttatggaggaggtgaagaatgatcatcagagaagcgcagaaatg
aagatcaatgctgcagtagggtttcgttatgtgattgatctcctttcttcagaaaataag
ttgattgttggtcacaattgcatcctggatattgctcacgtacacagcaaattcctagct
cctcttccttcaacagctgaagaatttgtctcctgcgtgaacaaatacttcccaagtatc
attgacaccaaaatacttttgaatgctgactacacattacaacgaaagatgaagagatct
agcacatcattatcctcagcattttcattattatgcccagagatagctcacgggtttaca
cgtaatgttctgtcttatgagccatgtgttaaggttgaggtccacgtggatgaaatgagg
tcttctaattggaactctggagccaagcatgaagctggttatgatgcttttatgacaggc
tgtgtgtttgcccaggcttgcagtcatctaggcatcgactttcagcttcattctccttct
gaaaatctgacccaaaatgaaaagctgcagaagcacatgaaccttctatatctgagttgg
attaatggtgacattattgatctgaggactggtaaccggtctgcagagttgtcaggctct
aatatgatcagaaagccatatcgaaagattttatttaagaacatcgttttactctgggga
ttcccttcgaaactgaaaccaagtatgataagagattgcatctgcaaaacccttggtcct
agctctgttatttctacatactgtatagatcaaaccgcagtgtttgttcagttcagcaag
gcagagttggcatcagactttttgaatttgaaggacactctagagcaaagtaacgatgca
atttcccatttgcatcctctttcacaacttctggaaggtggaaatacccatgctgctagt
tatgaaacttataaagagatctgtgcatcacctatctcaaaagtgttatttgcagatcaa
gcagaggctgttggcattaaatggaagaccgaattgttaccatctgataaagaagagagc
catgacaatactcgttcccatctagaaagtgcaatggatagtccacaggctgttcaaaaa
tccaagacaaggaacaccgaggatgtagtaaatgattcatcgaacaaacggttttgtgac
gatatcattgattcatttcttaaagtcgaaaagatcagaagaaccactaacttgtaa
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