Gossypium raimondii: 105781876
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Entry
105781876 CDS
T04129
Name
(RefSeq) polygalacturonase
KO
K01184
polygalacturonase [EC:
3.2.1.15
]
Organism
gra
Gossypium raimondii
Pathway
gra00040
Pentose and glucuronate interconversions
gra01100
Metabolic pathways
Module
gra_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
gra00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
105781876
Enzymes [BR:
gra01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.15 endo-polygalacturonase
105781876
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Gene cluster
GFIT
Motif
Pfam:
Glyco_hydro_28
Pect-lyase_RHGA_epim
Beta_helix
Nab2-zf4
Motif
Other DBs
NCBI-GeneID:
105781876
NCBI-ProteinID:
XP_012461856
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Position
13:complement(358792..360528)
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AA seq
394 aa
AA seq
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MMNLTRPSHSILLILFFMLAINSTSALTKYNVLNFGAKPNGKTDSTKAFLMAWKAACASA
DSTIIYVPKGRYLLGSMAFQGGCKSPQIIFRIDGTLVAPQDYRVLGKSTDWLSFQGVNGV
SILGGALDAKGPSLWACKASHSNCPSGATTLSFTNSKNIRIRSLLSLNSQMFHIVINGCE
NVNVQGVRIIAAGNSPNTDGIHVQLSKNVNIIKCSIKTGDDCISIGPGTKNLWIEQITCG
PGYGISIGSLAKDLKEEGVQNVTVRNTIFLGTQNGLRIKSWARPSTGFVQGVRFMDSLMR
NVQNPIVIDQNYCPHNLNCPNQVSGIKIKDIIYEGIRGTSSTEVAIKFDCSPKNPCTGIR
LQNVNLSYLNKPAQSSCSNVRGKALNLVRPESCI
NT seq
1185 nt
NT seq
+upstream
nt +downstream
nt
atgatgaacctcacacgtccttctcattccattcttctcattctctttttcatgttagcc
ataaattcaacgtctgcattaacaaagtacaatgtgttaaactttggggctaagcctaat
ggaaaaactgactccaccaaggctttcctcatggcatggaaagcagcctgtgcctcagct
gactccaccatcatatatgtaccaaaaggccggtatttgctcggttctatggccttccaa
ggtggctgcaaaagccctcaaatcattttcagaattgacggcaccctggtcgcccctcaa
gattatcgagtactaggcaaatctaccgattggctgagctttcaaggagtgaatggcgtt
tcaatccttggtggtgcacttgatgccaaaggaccatctctctgggcttgcaaagcttcc
cactccaactgtccttccggagctacgacattaagctttaccaattccaagaacatcagg
atccgtagcttattgtctttaaatagccaaatgtttcacatcgtgatcaatggatgtgaa
aatgtgaatgtccaaggggttaggatcatcgcggcaggtaatagccccaacaccgatggc
atccatgtccaattatccaagaatgtgaatatcataaaatgttcaatcaaaactggagac
gactgcatctcgattggtcccggtaccaagaatttatggatcgaacaaatcacttgtggt
cctggctatggcattagcattggaagtttagcaaaagatttaaaagaggagggggttcaa
aatgttacagtaagaaatacaatctttttgggcactcaaaatgggttaaggatcaagtca
tgggctaggcctagtactggatttgttcaaggagttcgatttatggattctttgatgaga
aatgtgcaaaatcctattgtaattgatcagaactattgcccacacaatctaaattgtccc
aatcaggtatccggaattaaaattaaagatattatatacgaaggtattcgaggaacgtca
tccacagaggtagctataaaatttgattgtagcccgaagaatccatgcactgggatacga
ttgcagaatgtcaatttgtcgtatttgaataaacctgctcaatcatcttgttccaatgtt
cgtgggaaagcattgaatttagttcgaccagaaagttgcatatga
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