Gossypium raimondii: 105782109
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Entry
105782109 CDS
T04129
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH10
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
gra
Gossypium raimondii
Pathway
gra03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gra00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
105782109
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gra03019
]
105782109
03041 Spliceosome [BR:
gra03041
]
105782109
03009 Ribosome biogenesis [BR:
gra03009
]
105782109
03016 Transfer RNA biogenesis [BR:
gra03016
]
105782109
Enzymes [BR:
gra01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
105782109
Messenger RNA biogenesis [BR:
gra03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
105782109
Spliceosome [BR:
gra03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
105782109
Complex C
U4/U6.U5 tri-SnRNP related factors
105782109
Ribosome biogenesis [BR:
gra03009
]
Eukaryotic type
Pre-60S particles
Helicases
105782109
Transfer RNA biogenesis [BR:
gra03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
105782109
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
nSTAND3
Late_protein_L2
ATPase_2
Motif
Other DBs
NCBI-GeneID:
105782109
NCBI-ProteinID:
XP_012462067
UniProt:
A0A0D2U4P8
LinkDB
All DBs
Position
13:53454167..53464759
Genome browser
AA seq
990 aa
AA seq
DB search
MEEEPAAPGKRKSPEKSDVTETPKQESAPKRRTLARTCVHEVAVPSGYVSTKDESIHGTL
SNPAYNGEMAKTYQFELDPFQQVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQ
RVIYTSPLKALSNQKYRELHQEFNDVGLMTGDVTLSPNASCLVMTTEILRGMLYRGSEVL
KEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAIKMVFLSATMSNATEFAEWICHLHKQP
CHVVYTDFRPTPLQHYVFPMGGSGLYLVVDENEQFREDNFMKLQDSFVKQRPGDWSKNKE
GKSGGRATKGGGGSGGSDIYKIVKMIMERKFHPVIVFSFSRRECEYHAMSMSKLDFNTKE
EKDDVEQVFRNAVLCLNEEDRCLPAIELMLPLLMRGIAVHHSGLLPVIKELVELLFQEGL
IKALFATETFAMGLNMPAKTVVFTSVKKWDGDSHRYIGSGEYIQMSGRAGRRGKDERGIC
IIMVDEQMEMNTLKDMVLGKPAPLVSTFRLSYYSILNLMSRAEGQMTAEHVIRNSFHQFQ
YEKALPDIGKKVSKLEQEADLLDASGEAEVAEYHKLKLELAQLEKKLMSEITRPERVLYY
LDPGRLIKVREGSTDWGWGVVVNVVKRTPAGLGALPARGGGYIVDTLLHCSPGSSENGVR
PKPCPPCLGEKGEMHVVPVQLPLISALSKIKVSIPADLRPPEARQSLLLAVQELGTRFPQ
GLPKLNPVTDMKIEDQEIVELVKQIEEHEKKLFAHPLHKSQDEHQIRSFQRKAEVNHEIQ
QLKSKMRDSQLQKFRDELKNRSRVLKKLGHIDADGVVQLKGRAACLIDTGDELLVTELMF
NGTFSDLDHHQVAALASCFIPVDKSSEQIQLRTEIAKPLQQLQESARKIAEIQHECKLDV
NIDEYVESTVRPFLMDVIYCWSKGATFAEVIQMTDIFEGSIIRSARRLDEFLNQLCAAAQ
AVGEVNLESKFAAASESLRRGIMFANSLYL
NT seq
2973 nt
NT seq
+upstream
nt +downstream
nt
atggaagaagaaccagctgcaccagggaagcgaaagtcacctgaaaagtcagatgtcact
gagacccctaagcaagaatctgcccccaaacggagaacactagcacggacatgtgtgcat
gaggtcgcagttccaagcgggtacgtttcaactaaagacgaatccattcatggcacactc
tcgaatcctgcctacaatggggaaatggctaaaacttatcagtttgagcttgatcctttt
cagcaagtttctgtagcgtgcctagaaaggaacgagtcagttttggtttcagcacatact
tctgcaggtaaaactgcggttgctgagtatgccattgctatggcctttagagataagcaa
agggtcatatatacttcaccgttgaaagctttgagtaaccagaagtacagggagctgcat
caagagttcaacgatgtggggctgatgactggtgatgttaccttgtctcctaatgccagt
tgtctcgtcatgacaacagaaattcttagagggatgctttacaggggctcagaggttttg
aaggaggttgcatgggttatttttgatgaaattcattatatgaaagatagggaaagagga
gttgtttgggaagagagtataatatttttgccaccagcaataaaaatggttttcctttca
gcaaccatgtccaatgccactgaatttgcagagtggatttgtcatttacacaaacagcct
tgccatgtggtgtacacggatttccggccaactcctttgcagcattatgttttccccatg
ggtgggagtggattgtaccttgtggttgatgagaatgagcaatttagggaggacaatttt
atgaagctccaggactcatttgtaaagcagagacccggtgattggagcaagaataaagaa
gggaagagtggtgggagagctaccaaaggtgggggtggttcagggggttctgacatatac
aaaatcgtgaagatgattatggaacggaaatttcacccagtcattgtttttagcttcagt
agaagagagtgcgaatatcatgcaatgtctatgtctaagcttgactttaatacgaaagag
gagaaggatgatgtagaacaagtttttcgcaatgcagtactgtgcttgaatgaagaagat
agatgtttgcctgccattgagttaatgttaccactgcttatgagaggcattgctgtacac
cattctggtcttcttcctgttatcaaagaattggtggagcttcttttccaggaaggcctt
ataaaggcactttttgccacagaaacttttgcaatgggtttaaatatgccagcaaaaact
gttgtattcacttccgttaagaagtgggatggtgatagccatcggtatataggatctggt
gagtatatccagatgagtggaagggcagggcgccgtggcaaagatgaacgtggtatttgt
attattatggttgatgagcagatggagatgaatacactcaaggacatggttttgggtaaa
ccggctcctttagtcagtactttcagactcagctactattcaattttgaatttaatgagc
cgtgcggaagggcagatgactgctgagcacgtgataaggaactcattccaccagtttcag
tatgagaaggccttacctgatatagggaagaaagtttcaaagctggagcaggaagctgac
ttgctagatgcttctggagaggctgaggtagctgaatatcataaactaaaacttgaatta
gcccagttagagaagaagttgatgtcagaaatcactaggcctgaaagagtactttattat
ctcgatcctggacggctgatcaaagtaagagaaggcagtacagactggggctggggagtg
gtagttaatgttgttaaaaggacccctgcaggattaggtgcattgcctgcacgtggtggt
ggttatattgtggatacattacttcattgttcgcccggttctagtgagaatggtgtacga
ccaaaaccatgccctccctgtctgggggagaagggtgaaatgcatgtggttcctgtccag
ttgcctcttatttctgctctgagtaaaattaaagtgtccataccagctgatcttcggcca
cctgaagccaggcagagtttattacttgcagtgcaggagctagggactcgatttccacaa
ggccttccaaaacttaatcctgttacggacatgaaaattgaagatcaagaaattgttgag
ttagtgaaacaaattgaggaacatgaaaagaagttgtttgctcatccactccacaagtct
caagatgagcatcaaattagatcttttcagaggaaggcagaggtgaatcatgagattcaa
cagctcaagtcaaaaatgcgtgattcccagcttcaaaaattccgtgatgaacttaagaac
cgttcaagggtcctgaagaagttaggccatattgatgctgatggtgttgttcagttgaag
ggacgggcagcctgcttgatagacactggagatgaactgcttgtgacagaactgatgttt
aatggtacattcagtgatcttgatcatcaccaagtagcagcccttgcaagttgtttcatt
ccagtagataaatcaagtgaacaaatacagttgaggacagagattgccaaaccattacag
caactccaagaaagtgcaagaaaaatagcagagatacaacatgaatgcaaattggatgta
aacatcgacgagtatgtagaatcaactgtaagaccatttttgatggatgtgatttattgt
tggtcgaagggtgcaacttttgcagaggtaatacagatgactgatatatttgagggtagc
attattaggagtgctagaaggcttgatgagtttctgaaccagctctgcgctgccgctcaa
gctgttggagaagtcaatttggagagtaagttcgccgcagcaagtgaaagcctacgtcga
ggcatcatgttcgccaactccctttatctgtaa
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