KEGG   Gossypium raimondii: 105782310
Entry
105782310         CDS       T04129                                 
Name
(RefSeq) helicase and polymerase-containing protein TEBICHI isoform X3
  KO
K02349  DNA polymerase theta [EC:2.7.7.7]
Organism
gra  Gossypium raimondii
Brite
KEGG Orthology (KO) [BR:gra00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:gra03400]
    105782310
Enzymes [BR:gra01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     105782310
DNA repair and recombination proteins [BR:gra03400]
 Eukaryotic type
  Other factors with a suspected DNA repair function
   DNA polymerases
    105782310
SSDB
Motif
Pfam: POLQ_helical HTH_61 DNA_pol_A DEAD Helicase_C ResIII Helicase_dom4_arc HHH_5 DUF179
Other DBs
NCBI-GeneID: 105782310
NCBI-ProteinID: XP_012462434
LinkDB
Position
13:54241399..54256561
AA seq 1864 aa
MMASGSPRARIDKFFASKKRKTQSPGLKTGRLEKNEKTTVECSPSAKGTLNSYIRTSQDN
EIVHPSCTTRGKDPIKMNLASEIDKSFKHENEHSLLLAETKSQAFEETHKGISMGLSEAG
NAAFGDHAEGAQIGENPELKKFATDFLSLYCSEVPVNVDSPSETKVNNLKRHGGPSMLSE
EDKRFKKRHLIAQQIQTVDIAVCSTNTNLEYETEEFLCNPSQDVNTSSNPFELQAGLRKC
NTATKSVLHTMECHTPGSSVIKGCSHRTPQSMRGSSMFSPGEAFWNEAIEIADGLFSQSD
ILSARVAEGINNPESQYEVKNTGNLGNTNVGYKSKEISDECESRVKLQGISASLESAVKQ
KKEIDKEVSLLPVKHLDFSFEDKNLDGGICHVLEKDSQEAEGSIINHILPPTVNKLIDHA
ELQKTEEGGKLEQASIHVVPKVEVNLSSQDNDSITSMSPANAAKKSIGTDEGNESSTPLS
SVALKDKLSISSWLPLEICKIYKKKGIEQLYPWQVDCLQVDGVLQRRNLVYCASTSAGKS
FVAEILMLRRLILTRKAALLVLPYVSICVEKAEHLEVLLEPLGKQVRSYYGNQGGGTLPK
DTSVAVCTIEKANSLVNRLLEEGRLSEIGIIVIDELHMVGDQSRGYLLELLLTKLRYAAG
EGTPESSSGESSGSSSGKADPAHGLQIVGMSATMPNVEAVADWLQAALYQTNFRPVPLEE
FIKVGNTIYDKNLDLVRTIPKAVDLGGKDPDHVVELCNEVVQEGQSVLIFCSTRKGCEST
AKHVAKFLKKFSVTAHGDNSEFIDITSAIDALRRCPAGLDPVLEETLPSGVAYHHAGLTV
EEREVIETCYRRGFVRVLTATSTLAAGVNLPARRVIFRQPRIGRDFIDGTRYKQMAGRAG
RTGIDTKGESVLICKTEEIKRIKGLLNESCPPLQSCLSEDKNGMTHAILEVVAGGMVQTA
NDINRYVRCTLLNSTKPFQEVVKSAQESLRWLCHRKFLEWNDETKLYGTTPLGRAAFGSS
LCPEESLIVLDDLSRAREGFVLASDLHLVYLVTPINVEVEPDWELYYERFMELSALEQSV
GYRVGVTEPFLMRMAHGVPISKSNGLRDSLKRLPAQFGNQPGINNSTMLSDEQTLRVCKR
FYVALILSRLVQEAPVGEVCEAFRVAKGMVQALQENAGRFASMVSVFCERLGWHDLEDLV
AKFQNRVSFGVRAEIVELTTIPYVKGSRARALYKAGLRTPLAIAEASIPEIVKALFESSS
WVAQESLAQRRMQFGVAKKIKNGARKIVLDKAEEARAAAFSAFKSLGYSVPQFSRPLILS
GSPGGEEAASTGAGDGSPCNVIGVEQIHTSAMPLMETGKNLEKVSSPNEGIMLTKASADN
LVASAEVNIDTTLQSNLGLENPAAVTGDKVNAVVEQGRSIKMATVSEYLDQGMQDRLNED
LSVGNADSACGKGPLNAVNAPGGFDSFLELWETAPEFCFDVHFNRRSEANSVAPFEIHGI
AICWENSPVYYVKLPKDLLWLDNRKNNFLSTSASSGKCNSLPPEHMLEMAKLRWKRIGDI
MGKNGVHKLTWNLKVQIQVLKSSAISIQRFSGMHLGGKDMGLEIIDNSCLLLPPVLINDG
FDMCIAAWILWPDEERSSRPNLENEVKKRLSSEAAAAANQSGRWKNQMRRASHNGCCHRV
AQTRALYSAFWKLLISEKLIDVFSYIETPLVRVLAEMELWGIGINMEGCLWARNLLGEKL
RYLEKEAYKLAGMKFSLSTAADIANVLYGHLKLPVPEGRNKGKQHPSTDKHCLDLLRDEH
PIVPVIKEHRTLAKLLNCTLGSICSLARLSRSTNKYTLHGRWLQTSTATGRLSMEEPNLQ
FVCF
NT seq 5595 nt   +upstreamnt  +downstreamnt
atgatggcgtctggttcgcctcgagcacgcatcgataagttttttgcttcgaagaagagg
aaaacccaatcacctggtttgaagacggggagacttgaaaagaatgaaaaaacaacagtg
gaatgttctcctagtgccaaaggcactttgaacagttacataagaacgtcacaagataat
gaaatcgtacacccttcatgtacaactcgtgggaaagatcctattaaaatgaacttggca
tcggagattgataaatctttcaaacatgaaaatgaacactccttgttattggcagaaacg
aagtctcaagcctttgaagagactcataagggaatatctatgggtttgtctgaggcagga
aatgctgcctttggagatcatgctgagggtgctcaaatcggggaaaatccagaattaaaa
aagtttgctactgattttttgtctttgtattgtagtgaagttccagtaaatgttgattca
ccatcagagacgaaggtgaataatttaaagagacatggtggtccatctatgttgagtgag
gaggataaaagattcaagaaaaggcatctgatagcccagcagatacaaacagtagatatt
gctgtttgttctactaacacgaatcttgaatatgaaactgaagaattcctttgcaaccct
tctcaagatgtaaacactagtagcaatccatttgagcttcaagcaggcttaagaaagtgc
aatacagcaaccaaatctgtcctacatacaatggaatgccatacacctggttcatcagtt
attaaaggatgttctcataggacaccacagtcaatgcgaggaagttctatgttttctcca
ggggaagctttctggaatgaagctattgaaattgctgatggtttgttttctcaaagtgat
attttatctgctcgagttgccgaaggaattaataatccggagagccaatacgaggtaaag
aatacaggcaacttaggaaatacaaatgttggttacaagtcaaaggaaatttcagatgaa
tgtgagagcagagtcaaacttcagggaatcagtgcttctttggagtcagcagtgaagcag
aagaaagagatagataaagaagtgtctctgctgcctgtcaagcatctcgacttttcattt
gaggacaaaaacttggatggaggtatttgccatgtattagaaaaggacagtcaagaggct
gaaggcagtattatcaatcatatattgccaccaactgttaataaactgatagatcatgct
gaactacagaaaactgaagagggaggaaaactggaacaggcatctattcatgtggtgccc
aaagtggaagttaatttatcaagtcaagataatgatagcataacttccatgtcaccagct
aatgcagcaaagaagtcaattggtactgatgaaggcaatgaatccagtactccattaagt
tctgtggcgcttaaagacaagctaagtatcagcagttggcttcctttagagatatgcaaa
atatataaaaagaaaggaattgaacaactctacccatggcaggttgactgccttcaggta
gatggtgtactgcagagaagaaatcttgtatattgtgcatctacaagcgctgggaaaagc
tttgtcgcagaaattttgatgttgcggcggttgatattaacaagaaaagcagcattactc
gtgcttccttatgtttcaatctgcgtagaaaaggcagaacatctggaggtccttcttgaa
ccacttggaaaacaagttcgtagttattatggaaatcagggtggtggcacacttcctaaa
gatacttctgtagctgtttgtacaatagagaaggcaaattctttagttaacagattgctg
gaagagggtcgtctgtcagaaatcggaattattgtgatagatgaactgcacatggttggt
gatcagagtaggggttatcttctggaacttctgttgacaaaacttcgttatgcagctggt
gaaggcacgccagaatcaagtagtggagaaagttcaggttccagtagtggtaaggctgat
ccagctcatggtttacaaattgtagggatgagtgcaacgatgccaaatgtggaagctgtt
gctgattggcttcaagcagctctgtaccagacaaattttcgaccagttccattggaggag
tttattaaagttggcaataccatttatgacaagaatttggatcttgttagaacaattcca
aaggcagttgaccttggcggtaaagatcctgatcatgttgttgaactgtgcaacgaggtt
gttcaagagggccagtcagtgttgatattttgttctactaggaaaggatgtgaatcaact
gcaaagcatgtggcaaaatttctcaagaaattctccgtcactgcccatggtgataacagt
gagtttattgatattacttcagcaatagatgccttgcgaaggtgtcctgctgggttggat
ccagtattggaagaaactcttccttctggtgttgcatatcaccatgcaggtctcacggtt
gaggaaagagaggttattgaaacctgctatcgtagagggtttgttcgtgtcttaactgct
acatctaccttagctgctggtgtcaacttacctgccaggagagtaatttttcgacaaccc
cgaattggccgtgattttattgatgggactagatacaaacagatggctggtcgggctggt
cggactggtattgatacaaaaggagaaagtgtgcttatttgcaagacagaagagatcaaa
agaattaaaggacttctaaatgaaagctgcccaccattgcagtcttgtttatcagaagat
aagaatggaatgactcatgcaattctagaagttgtggctggtggaatggttcaaactgct
aatgatattaaccgctatgttagatgtactcttctcaattctacaaaaccatttcaagag
gttgtaaaatcagctcaggaatctcttcggtggctgtgtcatagaaaatttcttgaatgg
aatgatgagaccaagttatatggtactactcccctaggacgtgcagcctttggcagttcc
ctttgcccagaggagtcgctgattgtactggatgatctttcaagggctagagaaggcttt
gtgcttgcatctgatttgcatttagtttatctagtaacaccaatcaatgttgaagttgag
ccagattgggagttgtactatgaacgcttcatggagttgtctgctcttgagcagtctgtt
ggttatcgagttggagtaacagaaccatttttaatgcgcatggctcatggtgtacctatc
tccaaatcaaatggattaagagatagcctgaagaggttacctgcacagtttggaaatcaa
cctgggatcaacaacagcactatgctttcagacgagcaaacacttcgagtgtgcaaacgg
ttttatgttgccctcatattgtcaagattagtgcaggaagctccagtaggtgaggtttgt
gaagcttttcgagtggcaaaaggcatggtgcaagccttacaagagaatgctggaaggttt
gcatcgatggtttccgtgttctgtgagagactaggatggcatgatctagaagacttggta
gcaaagtttcaaaatcgtgtttctttcggagtcagagcagagattgtagagcttactact
attccatacgttaaggggtcacgggctagagcactttataaagctggtttgcgtacacct
ttagcaattgcagaggcatctattcctgagattgttaaagctctttttgaatcctcctcg
tgggttgcacaagaaagcttagcacagcgacgcatgcagtttggcgtggcaaagaagatc
aagaatggtgcacgcaaaattgtcctagataaagctgaagaagccagggccgctgccttc
tcagctttcaaatcacttggctatagtgtcccacaattttctcgacctttgatattgagt
ggaagtccaggaggagaggaagctgcaagtaccggtgctggggatggctctccttgcaat
gttattggggttgagcaaatccacacgtcagccatgccactgatggaaactggcaagaat
ttggagaaagtttcttcacctaatgaaggaataatgctgacaaaagcctcagctgataac
ttagtggcttcagcagaagtaaacatagacactaccttgcagagcaacttaggtttggaa
aatcctgcagctgtaactggtgacaaggtcaatgctgtcgttgaacaaggcagaagtata
aagatggcaactgttagtgaatatctggatcaaggaatgcaggataggctcaatgaagat
ctctctgttggcaatgcagatagtgcttgtgggaaaggtcctctcaatgcagttaatgca
ccaggtggatttgattctttcctggagctgtgggaaactgctccggaattctgttttgac
gttcacttcaacagacgatcagaagcaaattctgttgctccctttgagatacatggcata
gcaatctgttgggaaaattctcccgtgtactatgtaaaattgcccaaggatttactatgg
ttggataatagaaaaaacaatttcttatcaacaagtgcctctagtggtaaatgcaacagc
ctacccccagagcatatgttggagatggctaaattgagatggaagagaattggtgatata
atgggaaaaaatggtgtccacaaacttacatggaacttaaaagtgcaaattcaagtgctt
aaaagttctgccatttctattcagagattttctggcatgcatcttggagggaaagatatg
ggtctggaaattattgacaactcatgcttgttattaccaccagttctgattaatgatgga
tttgatatgtgcatcgcagcatggattctttggcctgatgaggagagaagctctagaccc
aacctagagaatgaagtaaagaaaaggctatccagtgaggcagctgcagctgctaatcag
agtggcaggtggaagaatcagatgcggagagcttcacataatggttgctgccatagagtt
gctcaaacacgtgccttatattctgcattttggaagctactcatctctgaaaaacttatt
gatgtgttttcatatattgaaacaccattggttagggtccttgctgagatggagctttgg
ggaataggcatcaacatggagggatgcctctgggcacgaaacctgttgggtgaaaaacta
agatatcttgagaaggaagcttataagttggctggcatgaaattttcattgagcacagct
gctgatattgcaaatgttctgtatgggcatttgaagttgcctgtgccagaggggcgaaat
aaaggaaagcagcatccaagcactgacaagcactgcttggatctactgagggatgagcat
ccaattgttccagtcattaaagagcatagaacgttggcaaagctcttaaactgtacgttg
ggatccatttgttcacttgctaggttgtctcggagtacaaacaaatacacattacatggt
cgttggctccaaacatcgaccgcaactggtcgtctttcaatggaggaaccgaaccttcag
tttgtttgtttctga

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