Gossypium raimondii: 105782400
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Entry
105782400 CDS
T04129
Name
(RefSeq) serine/arginine-rich splicing factor SR45
KO
K14325
RNA-binding protein with serine-rich domain 1
Organism
gra
Gossypium raimondii
Pathway
gra03013
Nucleocytoplasmic transport
gra03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
gra00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
105782400
03015 mRNA surveillance pathway
105782400
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gra03019
]
105782400
Messenger RNA biogenesis [BR:
gra03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
105782400
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
Nup35_RRM_2
RRM_occluded
RRM_ACIN1
RRM_10
RRM_3
RBD_AKAP-17A
Motif
Other DBs
NCBI-GeneID:
105782400
NCBI-ProteinID:
XP_012462565
LinkDB
All DBs
Position
13:complement(48228909..48234158)
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AA seq
454 aa
AA seq
DB search
MLFAYMDKYYRTLYYHHPRPTRVSNFDSSFLSIPAMAKPTTRGRRSPSISGSSSRSRSRS
KSRSRSYSGSDSKSSSRSRSVSRSRSASPSSSRSRSSFSSSPSRGGRSRSRSPPKRRSPE
PGSRRGNSPPPQSKKPSPAPRKASPIRESLVLYVDSLSRNVNEGHLREIFSNFGEVVNVD
LAMDRVLNLPRGYGYVEFKTRADAEKALLYMDGAQIDGNVVRAKFTLPPRPKVSPPPKPI
SSAAKGDVPKSDNASVDIERGGPKRPRESSPQRKSLPSPRRRSPVGRRGGSPRRPPESPR
RRVDSPVHRNGETPPRRRPASPVRGRSPLSPPRRLRSPPRASPRRMRSPIRRRSPPPRRR
SPPRRARSPPRRSPLGRRRSRSPIRRPARSRSRSFSPRRGKGPAARHGRSSSYSRSPSPR
KVPRRISRSRSPRRPLRGRSSSNSSSNSSPPRKP
NT seq
1365 nt
NT seq
+upstream
nt +downstream
nt
atgctttttgcctacatggacaaatactatcgaactctctactaccatcacccacgcccc
actagggtttcgaatttcgactcttcctttctctctattcccgcaatggcgaagccgaca
acgagaggccgtcgctcaccttctatctccggctcctcttcccgttctcggtcgcggtcc
aagtctcgttcccgctcttattccggctcagactcaaagtctagttcccgttctcgctct
gtgtccaggtcgagatccgcttctccttctagctctcgctccagatcttccttctcttct
tctccttcccgtggcggtcgctctcgaagtcgcagccctcctaagcgccgaagtcctgag
cctggatctaggcgaggtaattcccctccgccacaatctaaaaagccatctccagcccca
aggaaggcttctcccatccgtgagtctctggttctctatgttgactcactgagcaggaat
gtcaatgaaggccatctaagagaaatattcagtaattttggtgaagttgtaaatgtggat
ctagccatggaccgtgttcttaatcttccgcgaggatatggctatgttgaattcaagaca
agagcagatgctgaaaaagctctactttacatggatggtgctcagattgatggcaatgtt
gtaagagcgaagtttacacttcctccacgaccaaaagtttcaccacccccaaagccaatt
tcttctgctgctaaaggagatgttcctaaatctgataatgccagtgttgatattgagagg
ggtgggccaaagcgaccacgggagtcttcacctcaacggaaatccctgccctcacctaga
cggagatcacctgttggtcgaagaggtggatctcccagacgaccaccagagtctccacgt
cgtcgagtagattctcctgttcatcgtaatggtgaaacacctcccaggcgccgccctgca
tctcctgtcagaggtcgttctccattgtctcctccaaggcggcttagatctcccccaagg
gcatctcctcgcaggatgcgtagtccaatccgaagacgttctcctcctccaaggcgccgt
tcacctcctagacgtgcacgtagtcctccaagaaggtctcctctaggtcgtagacggagc
cgttctccaattcgtagacctgctcgttctcgttcaaggtcattctcacctcgtagaggt
aaaggaccagcagcaagacatgggaggtcatcatcctattccagatcacctagcccccgg
aaggtaccgaggaggatttctaggagccgcagtcctagaaggccattgaggggaagaagc
agcagcaacagcagtagcaatagttctccgcctcgtaagccgtaa
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