Gossypium raimondii: 105782415
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Entry
105782415 CDS
T04129
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 15
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
gra
Gossypium raimondii
Pathway
gra03013
Nucleocytoplasmic transport
gra03015
mRNA surveillance pathway
gra03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
gra00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
105782415
09122 Translation
03013 Nucleocytoplasmic transport
105782415
03015 mRNA surveillance pathway
105782415
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gra03019
]
105782415
03041 Spliceosome [BR:
gra03041
]
105782415
Enzymes [BR:
gra01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
105782415
Messenger RNA biogenesis [BR:
gra03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
105782415
Spliceosome [BR:
gra03041
]
Complex C
Other components
EJC/TREX
105782415
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
105782415
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
YihI
Motif
Other DBs
NCBI-GeneID:
105782415
NCBI-ProteinID:
XP_012462592
UniProt:
A0A0D2VIF8
LinkDB
All DBs
Position
13:53947488..53952393
Genome browser
AA seq
428 aa
AA seq
DB search
MGETRDNDVYEEDLLDYDEEEEKAPDSVTAKVNGEAGKKGYVGIHSSGFRDFLLKPELLR
AIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSSLQQIEPSPGQVIALV
LCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKVHKDLLKNECPHIVVGTPGRILA
LTRDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPV
CKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVS
RAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGHKRILVATDLVGRGIDIERVNI
VINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDVLNQVQERFEVDIKELPEQI
DTSTYMPS
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atgggagaaacaagagacaacgatgtctacgaggaagatctcctcgattacgatgaagaa
gaagagaaagcccctgactctgtcactgctaaagtcaatggcgaggccggcaagaagggc
tatgttgggattcacagttctggattcagagacttccttttgaaaccagagcttcttcgg
gccattgtcgattctggattcgagcacccttccgaagtgcaacatgaatgtattccccaa
gctatactgggtatggatgttatttgccaagctaaatcaggaatggggaagactgcagtt
tttgttctatcttcattacagcaaattgaaccaagtcctgggcaagttattgccctcgtt
ttatgccatacaagggagttagcttaccagatttgtcatgagttcgagaggttcagtact
tatctgcctgatatcaaggttgctgtcttctatggtggtgtcaacatcaaagttcacaaa
gatttgctgaaaaatgaatgccctcacattgttgttgggacccctggaagaattttggct
ctgaccagagacaaggacctttctttgaagaatgtgaggcatttcattctcgatgaatgt
gacaagatgctggaatcacttgacatgaggagagacgtgcaggagattttcaagatgacc
cctcatgataagcaagttatgatgttttcagccacactcagcaaagaaatacgccctgtt
tgcaagaaattcatgcaagatcctatggaaatttacgttgacgacgaggccaagttgacc
cttcatggtcttgtgcagcactacatcaaattgagtgaactggagaaaaaccgcaagttg
aatgacctccttgatgcgttggacttcaatcaagttgttatctttgtcaaaagtgtgagc
cgagcagctgagttgaacaagttacttgtggagtgcaattttccttccatatgcatccac
tctggcatgtctcaggaagaaaggttaactcgctacaagggtttcaaggaggggcataaa
agaattcttgtggcaaccgatttggttggaaggggaatcgacattgaacgagttaacatc
gtcatcaactatgacatgcctgattctgctgatacatacctgcacagggttggtagagct
ggtcggtttggcaccaagggtcttgcaattacatttgtttcatccgcttcagattctgat
gtgctcaatcaggtccaagagaggtttgaggttgatataaaggagcttcctgagcagatt
gatacatctacgtacatgccatcataa
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