Gossypium raimondii: 105782643
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Entry
105782643 CDS
T04129
Name
(RefSeq) protein PIR
KO
K05749
cytoplasmic FMR1 interacting protein
Organism
gra
Gossypium raimondii
Brite
KEGG Orthology (KO) [BR:
gra00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gra03019
]
105782643
Messenger RNA biogenesis [BR:
gra03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
105782643
Factors involved in mRNA localization
Other mRNA localization factors
105782643
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FragX_IP
CYRIA-B_Rac1-bd
WASH-4_N
Motif
Other DBs
NCBI-GeneID:
105782643
NCBI-ProteinID:
XP_012462965
UniProt:
A0A0D2VCL0
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All DBs
Position
13:complement(30741579..30757346)
Genome browser
AA seq
1286 aa
AA seq
DB search
MAAVPVEEAIAALSTFSLEDEQPEVQGPAVLVSTERGSTISPIEYSDVSAYRLSLTEDTK
ALNQLNTLIQDGKEMASVLYTYRSCVKALPQLPESMKHSQADLYLETYQVLDLEMSRLRE
IQRWQASAATKLAADMQRFSRPERRINGPTITHLWSMLKLLDVLVQLDHLKNAKASIPND
FSWYKRTFTQVSIQWPDTDSMREELDDLQIFLSTRWAILLNLHVEMFRVNNVEDILQVLI
VFAVESLELDFALLFPERHMLLRVLPVLVVMATSSEKDSESLYKRVKINRLINIFKNDPV
IPAFPDLHLSPTAILKELSNYFQKFSSQTRLLTLPSPHELPPREAQDYQRHYLIVNHIGA
IRAEHDDFAIRFASAMNQLLLLKSTDGADVEWCKEVKGNMYDMVVEGFQLLSRWTARVWE
QCAWKFSRPCKDVGPSDSQELSSSYSDYEKVVRYNYSAEERKALVELVSYIKSVGSTMQR
SDTLIADALWETIHAEVQDFVQNTLATMLRTTFKKKKDLSRILSDMRTLSADWMANTNKP
DSEFQSLQHGGDESRGNFFYPRPVAPTAAQVHCLQFLIYEVVSGGNLRKPGGLFGNSGSE
IPVNDLKQLETFFYKLSFFLHILDYSATIATLTDLGFLWFREFYLESSRVIQFPIECSLP
WMLVDHVLESQSAGLLESVLMPFDIYNDSAQHALVVLKQRFLYDEIEAEVDHCFDIFVTK
LCEAIFTYYKSWSASELLDPSFLFALDNGEKYSIQPMRFTSLLKMTRVKLLGRTIDLRSL
IAERMNKVFRENLEFLFDRFESQDLCAIVELEKLIDILKHSHELLSKDLSIDPFSLMLNE
MQENISLVSFSSRLASQIWSEMQSDFLPNFILCNTTQRFIRSSKVPLVPVQKPSVPHAKP
NFYCGTQDLNSAHQSFARLHSGFFGIPHMISLVKLLGSRSLPWLIRALLDHISNKIATLE
PMITGLQETLPKSIGLLPFDGGVTGCMRLVKEQLSWGTKSELKAEVLRGIKEIGSVLYWM
GLLDIVLRELDTTHFMQTAPWLGLLPGADGQMLSQNAGESPVVNLFKSATAAIVSNPRCP
NPTSFYTMSKQAEAADLLYKANLNTGSVLEYALAFTSAALDKYCSKWSAAPKTGFIDITT
SKDFYRIYSGLQIGYLEQSVQLQPNNHDMLGDSVAWGGCTIIYLLGQQLHFELFDFSYQI
LNVAEVEAASIMQTHKSPHSGQGWDSMLEAMKKARRLNNHVFSMLKARCPLEDKMACAIK
QSGAPLPRIKFENTVSAFETLPQKGT
NT seq
3861 nt
NT seq
+upstream
nt +downstream
nt
atggcagcagttccagttgaagaagccattgcagctttatccacattctccctagaggat
gagcaaccagaagtacaaggaccagcagttttggtctcaactgaaagaggatcaactatc
agtccaattgagtatagtgatgtttctgcttatcgtttgtctcttacagaggacacaaaa
gctctcaatcagcttaacacacttatccaggatgggaaggagatggcatcagtgctttat
acatatcgcagctgtgtcaaagcacttcctcagcttcctgaatctatgaagcatagtcaa
gctgacttatatctagaaacatatcaagttctggacttggagatgagtcggttgcgtgaa
atacagcgatggcaagcatcagctgcgactaaacttgctgctgacatgcaacgcttttct
aggcctgagcgacgaattaatggccctacaataactcacctctggtccatgttaaagtta
cttgatgttttggtgcaacttgatcatctcaaaaatgctaaagcaagcatacctaatgat
ttctcttggtacaagaggacattcacacaagtcagcattcagtggccagatactgattct
atgagggaggaattggatgatttacagatttttttaagcacaaggtgggctattttattg
aacttgcacgtggagatgttccgtgtgaacaatgtagaggatatccttcaggttcttata
gtctttgctgttgagtcattggaactggattttgctcttctgtttcctgagcgacacatg
cttctgcgagtgttgcctgttcttgttgtcatggcaacatcatcggagaaagatagtgaa
tcactgtataagagggtgaaaataaatagactgatcaatatatttaagaatgatccagta
attcctgcattcccagatcttcatctttcgccaactgcaattttgaaagaattgtcaaat
tacttccaaaagttttccagccaaactcgtcttctcactcttccatcacctcatgaactc
ccaccccgagaagcacaagattatcagaggcattatctgattgtcaatcacattggtgcc
atccgtgctgagcatgatgattttgctatccgttttgcctcagctatgaatcagcttttg
ctgctgaaatctactgatggtgcagatgttgagtggtgcaaagaagttaaaggaaacatg
tatgatatggttgttgaaggtttccagctattgagtagatggactgcacgtgtttgggaa
caatgtgcatggaaattttctcgcccatgcaaagatgtcggtccttcagattcacaagag
ttatcatcatcttattctgattatgagaaggttgtacgatataattatagtgcagaggaa
aggaaagcacttgttgaacttgttagctacataaagagtgttggatcaacgatgcagcga
tctgatacattgattgctgatgctttgtgggaaacaatacacgcagaagtccaagatttt
gttcaaaatacattagctaccatgttgcgaactacatttaaaaagaaaaaggatctgtca
aggattctctcagatatgcggaccctttcagcagactggatggcaaacacaaacaagcct
gactccgagtttcagtctttacaacatggaggtgatgaaagtagagggaacttcttttat
ccaaggccagtggcacctacagcagcccaggttcattgcttgcagtttctcatatatgag
gtcgtctctggtggtaatctaaggaagcctgggggcctctttggtaacagtgggtctgag
attcctgttaatgacttaaagcagttggaaactttcttttacaagctaagcttcttcttg
cacatattggattattcagcaactattgcaacactgacagatcttggtttcttgtggttt
agagaattttacctggagtcttctcgtgtcattcaatttccaatagagtgctcccttcct
tggatgctggtggatcatgtgcttgagtcccaaagtgctggtcttcttgaaagtgtgttg
atgccatttgacatatataatgattcagcacagcatgcactggttgtgctgaagcagcgc
tttctttatgatgaaattgaggctgaggtggaccattgtttcgatatatttgttacaaaa
ttatgtgaagctattttcacatattacaagagctggtctgctagtgaactgcttgatcct
tcattcctctttgccttggacaatggagaaaagtattctatccagcctatgcggtttact
tcacttctaaagatgactagagtgaagttacttgggaggactattgatttaagaagtctg
attgctgaacggatgaacaaagtcttcagagaaaatcttgagtttctttttgatcgtttt
gagtctcaggatctatgcgccatagtggaattagaaaagctgatagacatattaaagcat
tcccatgaattgctttcaaaggatctttcaatagaccccttcagtctcatgttgaatgag
atgcaggagaacatttctcttgtgtcattttctagtcgactagcttctcagatttggtct
gagatgcaaagtgatttcctgccaaactttatcctttgcaatactactcagcgattcatt
cgatcttcaaaagttcctcttgttcctgttcaaaagccatcagttccacatgccaagcca
aacttctactgtggtactcaagatttaaattctgcacatcaaagctttgcgcgtttgcat
agtggcttttttgggattccacacatgatttctcttgttaaacttctaggatcaaggtcc
ttgccatggcttatccgagcactactagatcatatatcaaacaagattgccacacttgag
cctatgatcacaggcttgcaagaaacactgccgaaatctattggacttcttccttttgat
gggggtgtgacaggatgtatgaggcttgttaaagagcaactcagctggggaacaaaatca
gagctcaaggcagaagtccttcgcggaataaaagagattggaagtgtattatattggatg
gggctccttgatattgttttgagagagctggataccacacatttcatgcaaacagcacct
tggttgggcttgcttcctggtgcagatgggcaaatgctttcacaaaatgctggagagagt
cctgttgtcaacctcttcaaatctgctacagctgcaattgtgtcaaaccctaggtgccca
aatccaacctctttttatacaatgtcaaagcaggcagaagctgcagatcttctgtacaag
gctaacttaaatactggaagtgtgttagaatatgcccttgcatttacaagtgcagcctta
gataaatattgcagtaaatggagtgctgccccgaagactgggttcattgacatcacaacc
tcaaaggatttctatcgtatatatagtggcctccaaattggatatctagaacagtctgtt
caattacagcctaacaatcatgatatgctgggggattcagttgcttggggaggctgtacc
ataatatacttgctcggccagcagctgcatttcgagctgtttgatttttcataccaaatc
ctaaatgttgcggaagttgaagctgcatcaatcatgcaaacacataaaagtcctcattct
ggccagggatgggatagcatgttagaagcaatgaagaaagcgaggaggttgaacaatcat
gtattttcgatgctgaaagctcgatgccctctggaggacaaaatggcttgtgctataaag
caaagtggtgctcctttgcctcggattaagtttgagaatactgtttctgcattcgaaaca
ctgccgcagaaaggtacctga
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