Gossypium raimondii: 105782729
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Entry
105782729 CDS
T04129
Name
(RefSeq) general negative regulator of transcription subunit 3 isoform X1
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
gra
Gossypium raimondii
Pathway
gra03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gra00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
105782729
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gra03019
]
105782729
Messenger RNA biogenesis [BR:
gra03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
105782729
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
105782729
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GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
DUF5965
ZapG-like
Motif
Other DBs
NCBI-GeneID:
105782729
NCBI-ProteinID:
XP_012463115
UniProt:
A0A0D2W5C2
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Position
13:32687299..32696183
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AA seq
885 aa
AA seq
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MGASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRD
QIKTWIQSSEIKDKKISASYEQALVDARKQIEREMERFKICEKETKTKAFSKEGLGQQPK
TDPKEKAKSETRDWLNNVVGELESQIDSFEAEIEGLSVKKGKTRPPRLTHLETSITRHKA
HIMKLELILRLLDNDELSPEQVNDVKDFLDDYVERNQEDFDEFDDVDELYSSLPLDKVES
LEDLVAIGPLSKGGPILKTSLAASSQLPQGGSSQEHVEDTASQDGNSDIAKTPPPKSSTI
NSSAAATPAGSHVTPAPLNLPPHSLSGASSPSVLPDSNSAQGLLESTGTTNPPSPVNLSN
ATKEEDITNFPGRRPSPSLADAGVRGIGRGLSGQPSSTIPLVSGSVASGNGALGAVPPAS
DMAKRNILGVDERLGNSSMGQSLTSPISNRMILPQAAKANDGSAPVDSSNPNESAGLPGR
AFSPSMVSGMQWRPGSSFQNQNELVQFRGRTEIAPDIREKFLQRFQQVQQQGHSNLLSSM
SPLAGGNHNQFSAQQQSPLMQQFNPQSSCFSIPPGLGHGGQAPGLNSVTSASLQQQPNSI
HQQSSQQALATSVPKDADVGVAKVEEQLQSLPDGSSSEAIPTSGLAKNLMNEDDLKAPYA
IDSPAAVSGSLTEPARNIRDIDLSPGQPLQYNQSSSGLGVIGRRSVSDLGAIGDSLSGST
NSGGMHDQLYNMQMLEAAYYKIPQPKDSERARSYTPKHPAATPASYPQVQAPIVNNPAFW
ERISMDGYGTGTDTLFVAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKIAT
DEFEQGTYVYFDFHVANDDHQHGWCQRIKTEFIFEYNYLEDELIV
NT seq
2658 nt
NT seq
+upstream
nt +downstream
nt
atgggagcgagtcgcaagctacaaggagagatcgatcgtgttctcaagaaagtccaagaa
ggtgtcgatgtgttcgatagcatctggaacaaggtttatgatacggataatgcgaatcag
aaggagaaatttgaggctgacttgaagaaggaaatcaagaagctgcaaaggtacagggac
cagatcaagacttggattcaatcgagcgagatcaaggataagaaaattagtgcctcttat
gagcaggccctggtggatgctcggaagcaaattgagcgtgaaatggaaagatttaagatc
tgtgagaaggagactaagacaaaagcattttctaaagaaggcttgggccaacaacccaaa
actgatccgaaggagaaggctaagtcagagacaagggattggttgaacaatgtggttgga
gagttagaatcccagattgatagttttgaagctgagattgaggggctgtctgtgaagaaa
ggaaagacgagaccacctagactgacacacttggagacgtcaattacacgacacaaagct
catataatgaagttagaattgattttgagactattggacaatgatgaattgagtccagag
caagtcaatgacgtgaaagacttcttggatgattatgtggaacgtaatcaggaggacttt
gatgaatttgatgatgttgatgagctctacagctcattacctctagacaaggtggagtct
cttgaagatctagttgcaattggcccactttccaagggtggtccaatcttgaagacatct
ttggcagcatcatctcaattgcctcagggtggttcctcccaggagcatgttgaagataca
gcttcccaggatggtaattctgatatagcaaagaccccacctccaaaaagtagtacaatt
aattcttctgctgcagcaacgccagctgggagccatgtaacccctgctccactgaatctt
ccaccacatagtttgtctggtgcttcatctccttcagttcttccagattcaaattctgcc
caaggcctcttggaaagcactggcaccaccaatcctccttctcctgtaaatttgtctaat
gctacaaaggaagaagatatcacaaacttccctggccgtaggccatctccatcccttgct
gatgctggagtacgaggcattggtagaggtctatccggtcagccttcatctactataccc
cttgtttctggaagtgtggcttctggtaacggagcccttggtgctgtccctcctgcctct
gacatggcaaaaagaaatattttgggagttgatgagagacttgggaatagtagcatgggg
caatctttgacatcacctattagtaacagaatgatcttgcctcaggcagccaaggcaaat
gatggaagtgcacctgttgattctagtaatcctaatgagtctgctggactacctggcaga
gcattttctccttcaatggtttctggcatgcagtggaggcctggaagttcgtttcagaat
caaaatgagctggtgcagtttcgtggaagaactgagatagctcctgatataagggaaaag
tttttgcaacggttccagcaagtgcagcagcaaggccatagcaacctgcttagcagcatg
tctcctcttgctggaggaaatcataatcagttttctgcacaacaacaaagccctctcatg
cagcagttcaatcctcaaagctcgtgtttctctatcccacctggtctgggacatggtggc
caagcacctggtcttaatagtgttacctctgcaagcttacagcagcaaccaaactcaatc
caccagcagtctagtcagcaggcattggcaacaagtgttccgaaggatgctgatgttggc
gttgcaaaagttgaggaacaactgcagagtttacctgatggttcaagttctgaagctatt
ccaacttctgggcttgccaaaaatctcatgaatgaagatgatttgaaagctccatatgca
attgattctcctgctgctgtctcaggctctttgacagaacctgctcgaaatattagggat
attgatctttctcctggacaacccttacaatataaccaatcttctagtggtcttggtgtt
attggccggagaagtgtttccgatcttggtgccattggtgacagcctcagtgggtcaaca
aattctggaggaatgcatgatcaattatacaatatgcagatgcttgaggctgcatattac
aaaattcctcaacctaaagactcagaacgagcaaggagctacactccaaagcaccctgcg
gcaacacctgctagttaccctcaagttcaggcacccatagtgaataatcctgccttctgg
gaacgcataagcatggatggatatggcactggcactgatacactgtttgttgcattttat
tatcaacagaacacttatcaacaatatctagctgcaaaggagctgaagaagcaatcttgg
agataccatagaaaatacaacacatggtttcagcggcatgaggaaccaaaaattgctact
gatgaatttgaacagggaacctatgtatactttgattttcacgtggcaaatgatgaccac
caacatggatggtgtcagagaatcaagactgagttcatctttgagtataactatctggaa
gatgaacttatagtatag
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