Gossypium raimondii: 105783041
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Entry
105783041 CDS
T04129
Name
(RefSeq) uncharacterized protein LOC105783041 isoform X1
KO
K18734
protein SMG8
Organism
gra
Gossypium raimondii
Brite
KEGG Orthology (KO) [BR:
gra00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gra03019
]
105783041
Messenger RNA biogenesis [BR:
gra03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
105783041
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Ortholog
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GFIT
Motif
Pfam:
Smg8_Smg9
Motif
Other DBs
NCBI-GeneID:
105783041
NCBI-ProteinID:
XP_012463671
UniProt:
A0A0D2VKE0
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Position
13:57910700..57918113
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AA seq
1227 aa
AA seq
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MDSPNPPSMRVLTRPPPSPVPTSSPSSSSSNPPPPTPSFPRSLDGVVVVGFVSRRPDDSS
QLINRVVDSNVFGSGQMDRVLSIDKDELKDWFKYRRISYFHEEDKGILFLQFSSNGCPVF
DGSLSSGSDFDGVLEEREFGDLQGLLFMFSVCHIIIYIQEGSCFDTQNLKKFRVLQAAKH
ALIPYVKSQTTPPLPSRPHSSSSSRPLTTATAANTSPGRSGGMLGRNASAISVMLGLGSH
TSLFPGQCTPVMLFVFVDDFSDVPNSSANSSEESVKAPSLNHASSSSSLAKPALPMKGSA
SVVMLARPASKSEGGFRKKLQSSLEAQIRFLIKKCRTLSGSEGSHGGSRSGSVSNSAPLF
SLDASRAVVLLDKSTCKRRESLEFAIGLVEDVLNGKATSDSFLLETHSQSSNKEDLSSLK
EFIYRQSDILRGRGGLVANTNSGPAAGVGMVAVAAAAAAASTASAASAKTLTTPELPTLD
IWLSSSQLILHGLLSAKRRCIDETEIGKRKPRRGTIAGQSEGLASRSSESLDIAVSWLES
GKGLNTKFSSLWCERALPAAKDIYLKDLPACYPTSQHEAHLQKALHAFHSMVRGPAVELF
AKKLEEECTSMWESGRQLCDAVSLTGKPCLHQRHDLQTDELPSGTLTKRHSSGYVFLHAC
ACGRTRRLRSDPFDFESANITSNCFPDCDKLLLALQLPEVSSKGPIQSYSWSLIRIGSSR
YYEPSKGLLQSGFSATEKFLLKWKILLEKQKTPNGLSTRTMQLGSVGRSSSDSKPEFNAD
AQLKKASSTEFCSGEIETAVENPRKPLEISKFNGNKISFGRGLPNFTMKKPFSEVVAGSA
ATDSGFPPLQQRKQPLSGSEKGIKKNKASALSLEGAHATVAQGSQKPVKMSVMQNMNQVS
SDGSTAADSDPFLRIGSNFVPVNVSNDEKAKPNSDTKYVMAYVGFEHECPHGHRFLLNPE
HLNQLGPSYSLFEESHTACSVEASDHTLADSSKLRKNGGQGKVNLNTNGVIAAATPVNKV
KNKDEAKKVVANSNVFKDGLTQLSMPEDHNKTPVNAAGVPVAGKDLEKGFHAVSLDDSGS
AFSMLNRDLPIYLKCPHCRSSRNKKEPPKVKFAGTISQLQRIFVVTPPFPVVLATCPVIQ
FKASCLPATVPDREQKLQFSLGCKVLLPPESFLILRLPFMYGVELDDKSVHSLNPFEDKP
EVTGWVVMGTTLQLMSKGSGLNEGFYK
NT seq
3684 nt
NT seq
+upstream
nt +downstream
nt
atggactctcctaacccgccttcaatgcgggttttgacccgcccacctccgtcacctgta
cccacttcttctccttcgtcttcttcttcgaatcccccgcctccaacgccgtcatttccc
cgttctctcgacggcgtcgtggtggtgggcttcgtatctcggagacccgacgactcttcc
cagctcattaaccgggttgtagactccaacgtgttcgggtcaggtcagatggaccgggtt
ttgtctatcgacaaggatgaacttaaggattggtttaagtataggagaattagttacttt
catgaggaagataaagggattttgttcttacagttttcttcaaatgggtgcccggttttt
gatgggtcattgagttccgggtcggattttgatggggttttggaggaacgggagttcggg
gatcttcaaggcttgctttttatgttctctgtctgccatataatcatatatattcaggag
ggatcttgctttgatactcaaaatttgaaaaaatttcgggtgttgcaagctgctaagcat
gcattaatcccatatgtgaaatctcaaacaacaccaccattgccgtcaaggcctcattct
tcttcgtcttctcgccctttgacaacagcaactgctgccaacacttctccaggtagaagt
ggtggcatgttgggacgaaatgcttcagctatctctgtcatgttaggtttaggttcccat
acttctttgtttccaggtcagtgtactccagtgatgctatttgtttttgttgatgacttc
tctgatgtaccaaattctagtgctaatagtagtgaagagtcagtaaaggcaccctcactt
aatcatgcttctagttcaagcagtttagcaaagccagccttgcctatgaaaggttctgct
tctgtagtaatgttagcacgtcctgcaagtaaatcggaaggtggatttcggaagaaactg
cagtcatcccttgaggcacagatccgctttttaattaagaaatgtcgaacactctcaggt
tcagaaggcagccatggtgggtcaagaagtgggagtgtttcaaattcagctcctctattt
tctcttgatgcatctagggctgttgtacttcttgacaagtcaacatgtaagagaagggaa
tctctggagttcgccattggtcttgtggaagatgttttgaatggaaaagcaacgtcagat
tcgtttttgctcgaaactcatagtcagagttcaaacaaagaggatctatcatctttgaag
gaatttatctacaggcagtcagatattttgaggggaagagggggactggttgctaacacc
aacagtggccctgctgctggtgttggtatggtggctgttgctgccgctgccgccgctgcc
tcaactgcctcagccgcctctgcgaagactttgaccacccctgaactcccaactttagat
atatggctgtcttctagtcagcttattctacatgggctgctctctgcaaagcgtaggtgt
atagatgaaactgaaattggtaaaagaaaacctcgtcgaggtaccattgctgggcagagt
gaagggcttgcttctagaagcagtgaatctctagatattgcagtatcatggttggaaagt
ggtaaagggcttaacacaaagttctctagtttgtggtgtgaaagggcccttccagctgca
aaagatatttatttgaaagacttgcctgcttgttatcccacatcacagcatgaagctcat
ttacagaaggctttgcatgcttttcactcgatggtcaggggacctgcagtggaacttttt
gcaaagaagctggaggaagaatgcacgtcaatgtgggaatctggaaggcaactttgtgat
gctgttagtttgactggaaaaccatgtttgcaccaaagacatgatcttcagaccgatgag
ttgccttcaggaactttgacgaagcgtcattcaagtggatatgtctttcttcatgcttgt
gcttgtggtcgaacacggcgattgcggtctgatccttttgattttgaatcggcaaacatt
acctccaattgctttcctgattgtgataagcttctgttagcgctccagctaccagaagta
agcagcaaaggaccaattcagtcatattcttggagtttgattcgtattggcagttcaagg
tactatgaaccttctaaaggcttacttcagagtgggttcagtgccactgagaagttcctt
ttaaagtggaaaatacttttagagaaacagaaaaccccaaatggcttatcaacaagaact
atgcaactaggttctgtgggtaggtcaagcagcgattctaagcctgagttcaatgctgat
gctcagttaaagaaggctagttccacagagttctgttctggagaaatcgagactgctgtt
gaaaatccaagaaaacccttggaaatcagcaagttcaatggtaacaagatcagttttggt
agaggccttcccaatttcacaatgaaaaaacctttttcagaagttgttgctggatcagca
gctacagattcaggattccctcctcttcagcagaggaaacaacctttatcggggtcagaa
aaaggaataaagaaaaataaggcaagtgcactgagtttggaaggggctcatgcaactgtt
gctcaaggatctcaaaaacctgtaaagatgtctgttatgcaaaacatgaatcaagtaagt
tctgatggtagcacagctgcagatagtgacccttttctacgaataggcagtaattttgtt
cctgtgaatgtgagcaatgatgagaaggcaaaaccaaactcagacacgaagtatgtgatg
gcatatgttggttttgagcacgaatgcccacatggccatcgtttcttattgaacccagag
catctcaatcaacttgggccttcatattcattgtttgaagaatctcataccgcttgttcg
gtggaagcttcagaccatacattggcagattcttcaaagttgaggaagaatggtgggcag
ggtaaagttaatctgaatacaaatggtgttattgctgctgctactcctgtaaacaaggtg
aaaaacaaggatgaggcaaaaaaggtggtagcaaatagtaatgtctttaaagatgggctg
acacagctttctatgcctgaggaccataataagacacctgtgaatgcagcaggtgtgcct
gtcgctggaaaagaccttgaaaaaggcttccatgctgttagccttgatgatagtggatcc
gctttctccatgttgaatagagatttaccaatatacctgaagtgtccgcactgcaggtct
tccaggaacaaaaaggaaccacctaaggttaagtttgctggcacaatatcacagcttcag
agaatttttgtggtcacacctccctttcctgttgttctggcaacttgtccagttatacaa
tttaaggcatcttgcttgcccgcaacggttccagaccgtgagcaaaagttgcagttcagc
cttggatgtaaagtgctcttaccacccgagagttttctaatactgagactgccatttatg
tatggtgtagaactggatgataaaagtgtgcattctctgaatccctttgaagataaaccc
gaagttactggttgggttgttatgggcacaacattgcaacttatgtccaaaggaagtggt
ctcaatgagggattttataaatag
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