Gossypium raimondii: 105783092
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Entry
105783092 CDS
T04129
Name
(RefSeq) LOW QUALITY PROTEIN: RNA-dependent RNA polymerase 1
KO
K11699
RNA-dependent RNA polymerase [EC:
2.7.7.48
]
Organism
gra
Gossypium raimondii
Brite
KEGG Orthology (KO) [BR:
gra00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
gra03036
]
105783092
Enzymes [BR:
gra01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.48 RNA-directed RNA polymerase
105783092
Chromosome and associated proteins [BR:
gra03036
]
Eukaryotic type
Gene silencing
RNA interference (RNAi) pathway
RDRC (RNA-directed RNA polymerase complex)
105783092
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GFIT
Motif
Pfam:
RdRP
UvrB_inter
Motif
Other DBs
NCBI-GeneID:
105783092
NCBI-ProteinID:
XP_012463738
UniProt:
A0A0D2TUA6
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Position
13:2233063..2239076
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AA seq
1100 aa
AA seq
DB search
MGKTIQVYGFLSNVSAGEVKTFLEGYTGRETVYALKIRQHKKGGRAYAIVQFTRSSAAEL
IIRLANQRLYYGRSYLKAREMETDIVPKPRAFLHTMERVTVNFGCQVSVEKFYVLWKAEN
VTLNFGTGMRKLEFLVSYCRSKYKLELFYENIWQIELRCPDSQTSKHLLIQLFGAPRIYE
KEVRASELVFDDPLLNYFKDVPDDQWVRTTDFTRSNCIGQSSVLCLELPHNLRLPNFREN
FAYYKENESRLVLESGSSYSCNLSLVPIVCPLRVIDLPFEILFKVNLLVQNGCIPGPALD
DTFYRLVDPCRMDKVYIDHALEKLYYLRECCYEPSRWLFEEYKNFSRSRKYQGSPAISLD
EGLVYVRRVQITPSRVYFCGPEINVSNRVLRQFHNDIDNFLRISFVDEELEKIHSINVQA
RGRRTSIYERILSTLRNGVLIGDKRFEFLAFSSSQLRENSAWMFASRKGLTAADIRSWMG
NFSKIRNVAKYAARLGQSFSSSTETLSVSKDEINLIPDIEIMKDGIKYVFSDGIGKISAK
FAKKVAAKCRLKGCTPSAFQIRIGGFKGVVAIDPTSSWKLSLRKSMEKYESENTKLDVLA
WSKYQPCFLNRQLITLLSTLGVPDRAFEKKQREVIEQLNALLTDPLEAQEALELMSPGEN
TNILKEMLLCGYKPDAEPFLSMMLEAFRASKLLELRTKARIFVQKGRSMMGCLDETRTLN
YGQVFVQFSGSRSEQRCIVQGKVIVAKNPCLHPGDVRVLRAVNVPDLHHMVDCVVFPQKG
TRPHPNECSGSDLDGDIYFVCWDPELIPYKQMDPMDYSPAPTTILDHEVTIEEIEEYFTN
YIVNDSLGIISNAHTAFADREPXAKLFSIAVDFPKTGVPAEIPQELRVKEYPDFMEKPDK
PSYQSHNVIGKLFREVKNLAPNECSIKFLTREKMQRFYDPDMEVEGFEDYIDDAFFHKSK
YDYKLGNLMDYYRVKTEAEILSGGILKMSRSFTKKRDAEAISMAVRSLRKEARSWFNEER
SELDEEIDDAYAKASAWYYVTYHPSYWGQYNEGMNRDHFLSFPWCVYDKLIQIKKEKAAV
REALDLSSLEHRFQRRLHLH
NT seq
3303 nt
NT seq
+upstream
nt +downstream
nt
atgggtaagacgattcaggtttatgggttcctctcaaatgtgtctgcaggagaagtaaag
acatttttagagggatatacgggcagagaaactgtttatgccctgaagatcaggcagcat
aaaaagggtggaagagcatatgctattgtgcagtttaccagaagctctgctgcagagcta
attataaggttggctaatcaaaggctatactatgggagatcatatcttaaggctcgagaa
atggagaccgacatcgtgccaaagccgagagcctttttgcacacaatggaacgtgttacg
gtgaattttggctgtcaagtctctgtagaaaaattttatgttctctggaaagcagaaaat
gttactctaaattttgggactggaatgcggaaattggaatttctagtgtcgtattgtagg
tcaaaatacaagcttgagctcttctatgagaacatctggcagattgagctgcgttgtcct
gacagtcaaacctcaaagcatcttctgattcagttatttggcgctccccggatatatgag
aaagaagtgcgtgcttctgaacttgtatttgatgatcccttgcttaactatttcaaggat
gtgcctgatgatcaatgggtaaggacaacggatttcactcgttctaattgtattggacaa
tcttctgtattatgcttggagcttcctcacaacctccgacttccaaattttcgggagaac
tttgcttattacaaagaaaatgaaagcagattggttttggaaagtggttcttcttactcc
tgcaatcttagtctagtcccaattgtatgccctttgcgggtaattgacttgccatttgaa
atcttgttcaaggttaatctgttggtgcaaaatgggtgcatcccaggaccagcacttgat
gatactttttatcgattggttgatccttgtagaatggacaaagtctacatagaccatgcg
ctggagaaactttattatctaagagaatgctgctatgaaccttcgaggtggctctttgag
gagtacaaaaatttctcaagatcgaggaaatatcaaggttcacctgctatatccttagat
gaaggtttggtatatgtaagaagggttcagataacgccttctagggtctacttttgtggt
cctgagattaatgtttcaaaccgtgtgctacgccaattccataatgatattgataatttt
cttcgcatcagttttgttgatgaagagttggagaagatccattcaataaatgtgcaggca
aggggtaggagaactagtatttacgaaaggattctttctactcttagaaatggcgtactg
attggggataagagatttgaatttcttgccttttcatcaagtcaattacgggagaactca
gcctggatgtttgcttcaagaaaggggctcactgcagcagatataaggtcatggatggga
aattttagtaaaataagaaatgtggcaaaatatgctgctagactgggccaatctttcagt
tcatcaactgaaactcttagtgtttctaaagatgaaatcaaccttattccagatatagaa
attatgaaggatgggattaaatacgtcttttcagatggaattggaaaaatatcagctaaa
tttgctaagaaggtggcagctaaatgtcggttgaagggttgcactccatctgcctttcag
attcggattggtggattcaagggtgttgtggctattgacccgacctcatcttggaaatta
tccctcagaaagagtatggaaaagtatgaatcagagaacactaaactggatgttttggct
tggagtaagtatcagccatgttttctgaaccgccagttgattaccctgttatctactctt
ggagttccagaccgtgcttttgagaaaaaacaaagagaagtaattgagcaactcaatgct
ctcctgacggatcctttagaggctcaggaggctctggagttaatgtctccaggagaaaat
actaacattctgaaggaaatgctcttgtgtggttataagcctgatgctgaaccattcctt
tcaatgatgttggaagcttttcgagcttcgaagttgctggagttgcggactaaagccagg
atttttgttcaaaaaggaaggtctatgatgggatgtctggatgaaactagaaccttgaat
tatggccaagtttttgtgcagttttctggctctagatctgagcaacgttgtattgttcag
ggtaaggtaattgttgccaaaaacccctgcttgcacccaggcgatgtgcgtgtattaagg
gctgtcaatgtgcctgatttgcaccatatggtcgattgtgttgtttttccacagaaagga
accagacctcatcccaatgaatgctctggaagtgatctggatggtgatatttactttgtc
tgttgggaccctgaattgattccatataagcaaatggatcctatggattattcacccgct
ccaacaaccatattggatcatgaagttaccattgaggaaattgaagaatacttcacaaac
tacatagtcaatgacagtttgggaataatttcaaatgctcatactgcttttgctgataga
gaacctnnggcaaagctgttttcaattgcagttgactttccgaaaacgggtgtaccagct
gaaataccacaagaactgagggtcaaagaatatccggatttcatggagaaaccagacaag
ccaagttatcaatcacacaatgttattggaaagcttttccgagaggtgaagaaccttgca
cccaatgaatgctcgattaagttcttaactcgggaaaagatgcagaggttttatgatccc
gacatggaagttgaaggctttgaggattatatcgacgatgctttcttccacaaaagtaaa
tacgattacaaattggggaatttgatggactattacagggtcaaaacggaggctgaaata
ctcagtgggggtatcttgaaaatgtcgagatcttttacgaagaaaagggatgcagaagcg
atcagtatggcagtgagatcattgagaaaggaagctaggtcatggttcaatgaagaaaga
agtgagttggatgaagaaatagatgatgcatatgcaaaagcctcagcttggtactatgtc
acatatcatccaagttattggggtcagtataatgagggaatgaatagggatcatttcctg
agctttccttggtgtgtttatgacaagttgatccagatcaagaaagaaaaagcagctgtt
cgggaagctttggatttgtcgtctctggaacatcgctttcaacgtagattgcatttgcat
tga
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