Gossypium raimondii: 105783103
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Entry
105783103 CDS
T04129
Name
(RefSeq) eukaryotic initiation factor 4A-3
KO
K13025
ATP-dependent RNA helicase [EC:
5.6.2.7
]
Organism
gra
Gossypium raimondii
Pathway
gra03013
Nucleocytoplasmic transport
gra03015
mRNA surveillance pathway
gra03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
gra00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
105783103
09122 Translation
03013 Nucleocytoplasmic transport
105783103
03015 mRNA surveillance pathway
105783103
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gra03019
]
105783103
03041 Spliceosome [BR:
gra03041
]
105783103
03009 Ribosome biogenesis [BR:
gra03009
]
105783103
03012 Translation factors [BR:
gra03012
]
105783103
Enzymes [BR:
gra01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
105783103
Messenger RNA biogenesis [BR:
gra03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
105783103
mRNA cycle factors
Stress granule specific factors
105783103
Spliceosome [BR:
gra03041
]
Complex C
Other components
EJC/TREX
105783103
Ribosome biogenesis [BR:
gra03009
]
Eukaryotic type
90S particles
Helicases
105783103
Translation factors [BR:
gra03012
]
Eukaryotic type
Initiation factors
eIF-4
105783103
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_30
Cas3-like_C_2
AAA_22
NAT10_TcmA_helicase
Motif
Other DBs
NCBI-GeneID:
105783103
NCBI-ProteinID:
XP_012463770
UniProt:
A0A0D2TWP5
LinkDB
All DBs
Position
13:complement(8089674..8093141)
Genome browser
AA seq
406 aa
AA seq
DB search
MSAAAATSRATRRMGAEDEKLVFETTEGIEPILSFDQMGLKDDLLRGIYNYGFEKPSAIQ
QRAVMPIINGRDVIAQAQSGTGKTSMIALTVCQVVDTASREVQALILSPTRELASQTEKV
IRTIGDFMNIQAHACIGGKSVGEDIRKLENGVHVVSGTPGRVCDMIKRRTLRTRAIKLLI
LDESDEMLSRGFKDQIYDVYRHLPPELQVCLISATLPHEILEMTSKFMTDPIRILVKRDE
LTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRSNNFTVS
SMHGDMPQKERDAIMAEFRDGATRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRI
GRSGRFGRKGVAINFVKSDDIKILRDIEQYYSTQIDEMPMNVADLI
NT seq
1221 nt
NT seq
+upstream
nt +downstream
nt
atgtcggcggcggcggcgacgagccgagcgactcgacggatgggagccgaggatgagaag
ctagtgttcgaaacgacggaaggaatcgagccgatattaagtttcgatcagatgggacta
aaagacgatctcctccgtggaatctacaattacggcttcgaaaagccatctgctatccag
cagagagccgtcatgccgataatcaatggccgcgacgtcattgcccaagctcagtctggt
accggtaaaacctccatgattgccctcaccgtttgccaagtggttgacacagctagcaga
gaggttcaagcattgatcttgtcacccacgagggaactggcttcacaaacggagaaagtg
atacggacaattggtgatttcatgaacatacaagcgcacgcatgtattggaggcaaaagt
gtgggtgaagatataagaaagctagaaaatggagttcatgtagtgtcgggaacacctggt
agagtttgtgatatgatcaaacgaagaaccctacgtacaagggctattaaactattgatt
cttgatgaatctgatgagatgttgagccgagggttcaaagatcaaatttatgatgtttac
cgacatcttccaccagaacttcaggtttgtttgatatctgctaccctccctcatgaaata
ttggaaatgacgagcaaatttatgactgatcctataaggatcctcgtgaagcgtgatgaa
ttgactctggagggaattaagcagttttttgtagcagttgaaagggaagagtggaagttt
gatacactatgtgatctttacgacacgttgacaatcactcaagctgttattttctgcaat
acaaaacgaaaggtcgattggctaactgagaagatgcgtagcaataactttacggtatcc
tcaatgcatggagatatgcctcagaaggaaagagatgcgattatggctgagtttcgggat
ggtgcaacccgtgttcttatcactacagatgtttgggccaggggacttgatgttcagcag
gtgtctctggtgatcaattatgacctgccaaacaatcgagagctttacatccataggatt
ggacgttctggtcgattcggacgaaagggtgttgctattaatttcgtgaaaagcgatgac
atcaagattcttagagacatagagcagtactacagtacccagatcgacgaaatgccaatg
aatgtcgcggatctgatatga
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