KEGG   Gossypium raimondii: 105784155
Entry
105784155         CDS       T04129                                 
Name
(RefSeq) protein ROOT INITIATION DEFECTIVE 3
  KO
K14829  pre-rRNA-processing protein IPI3
Organism
gra  Gossypium raimondii
Brite
KEGG Orthology (KO) [BR:gra00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:gra03009]
    105784155
Ribosome biogenesis [BR:gra03009]
 Eukaryotic type
  Pre-60S particles
   5-FMC complex
    105784155
SSDB
Motif
Pfam: Beta-prop_WDR3_1st WD40 Beta-prop_WDR3_2nd Beta-prop_WDR5 Beta-prop_THOC3 WD40_CDC20-Fz WD40_WDHD1_1st WD40_Prp19 EIF3I WDR55 Beta-prop_WDR36-Utp21_2nd Beta-prop_EML_2 Beta-prop_Vps41 Beta-prop_WDR41 NBCH_WD40 Beta-prop_TEP1_2nd Beta-prop_WDR36-Utp21_1st Beta-prop_WDR90_POC16_2nd Beta-prop_EML Beta-prop_TEP1_C Beta-prop_CAF1B_HIR1 Beta-prop_IP5PC_F Beta-prop_SPT8 WD40_Gbeta Beta-prop_WDR75_1st ANAPC4_WD40 Beta-prop_DCAF4 Beta-prop_SCAP Beta-prop_IFT140_1st Beta-prop_ACSF4 WD40_MABP1-WDR62_2nd Beta-prop_HPS5 WDR54 Beta-prop_NWD2_C BCAS3_WD40 PQQ_2 PEP5_VPS11_N Nucleoporin_N
Other DBs
NCBI-GeneID: 105784155
NCBI-ProteinID: XP_012465409
UniProt: A0A0D2W725
LinkDB
Position
13:47569599..47571268
AA seq 411 aa
MSSPSHPIVLTSSLNGPVTAFDAVSGVPLCHFSGSRSPYHGLALVGNSFIATSHISAETS
SASIHLYNWWSSTALHNFLVPEPVAPLSATLDGLYLFAGGLSGSIHALSVPSGEILASYS
AHNKPVSCLKISEDGSLLISGGDDGTISFVPIFQIIEASPDKSSTSLMLQRFVAHDGSVT
AIDSIMAQCNSTIISSSLDCTIKIWGLLDGTKLRTVTFPCAIMGIALDQIRKEFFAAGSD
GFIYKGSINAGSKKHVNQTQEFIRWAQKHDSGIVSLVMVSETNNLVSASEDGKVYIWEIE
TGEAIMGLDNDVGSISDMVVANGMERGLNFGKKADNFYDGYSGLCRVELSRSLKDTLDIE
DVLRVATKDRSRAIDMLESAISAYERLLELILKEAKKGPSSSKSGNEKHSL
NT seq 1236 nt   +upstreamnt  +downstreamnt
atgtcgtctccttcgcatcctattgtcctcaccagctcccttaatggtcccgttactgcc
ttcgatgctgtctctggtgtccctctttgtcacttctctggcagcaggtctccttaccat
ggtcttgcccttgttggcaactcattcattgctacttctcatatatctgcagagacttct
tcagcctctattcatctctacaattggtggtcttcaacagctctacacaattttcttgtt
ccagaacctgttgcacccttgtcagctacccttgatggcttgtatttgtttgctggtggc
ctttcaggttctatacatgctctctcagttccttcaggggagatactcgcatcatattca
gcacataacaagcctgtttcctgcctcaaaataagtgaagatgggtcacttttgatatct
ggtggtgatgatggtacaatttcttttgttccaatctttcaaatcatcgaggcatcacct
gataagagctccaccagcttgatgttgcagagatttgttgcacatgatggctcagtgaca
gcaatagactctattatggcacagtgcaactctaccataatatcaagctcgttggattgc
acgattaagatttggggattattggatggaacaaagttaagaacagtgacatttccatgt
gccattatggggatagcattggatcaaataaggaaagaattttttgctgcaggctctgat
ggattcatctacaagggatcaataaatgctggaagcaaaaagcatgtgaatcaaacacag
gagttcattagatgggctcaaaagcatgacagtgggattgtatctttagttatggtgagt
gagacaaacaatttggtatctgcttcagaagatgggaaggtttatatatgggagattgaa
acaggtgaggccattatgggacttgataatgatgtagggagcattagtgatatggtggta
gctaatggtatggagcgaggcttaaattttggtaaaaaggctgacaacttttatgatgga
tatagtggattatgcagggtggagctgagcaggtcactaaaggacactttggacatagaa
gatgtgttgagggtggctacaaaagaccgaagcagagccattgatatgcttgagtctgca
atttcagcgtatgaaaggttgctggagctcattctcaaggaagccaagaaaggtcctagt
agcagcaaaagtggaaacgaaaaacatagcctctaa

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