Gossypium raimondii: 105784723
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Entry
105784723 CDS
T04129
Name
(RefSeq) cleavage stimulation factor subunit 77 isoform X1
KO
K14408
cleavage stimulation factor subunit 3
Organism
gra
Gossypium raimondii
Pathway
gra03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
gra00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
105784723
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gra03019
]
105784723
Messenger RNA biogenesis [BR:
gra03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
105784723
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Suf
HAT_PRP39_N
HAT_PRP39_C
HAT_Syf1_CNRKL1_N
TPR_14
TPR_19
HAT_Syf1_CNRKL1_C
TPR_15
Iml2-TPR_39
TPR_CcmH_CycH
TPR_16
TPR-S
TPR_Slam
TPR_2
Motif
Other DBs
NCBI-GeneID:
105784723
NCBI-ProteinID:
XP_012466107
UniProt:
A0A0D2SLJ5
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Position
6:complement(55916530..55931718)
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AA seq
767 aa
AA seq
DB search
MAAVDKYNVESAEILANSALHLPITQAAPIYEQLLTIFPTAAKYWRQYVEAQMGVNNDDA
TKQIFSRCLLNCLHVPLWRCYIRFIRKVNDRKGVEGQEETRKAFDFMLSYVGADIASGPI
WMEYIAFLKSMPAVNTQEETQRMTAVRKAYQKAIVTPTHHIEQLWRDYENFENSVSRQLA
KGLLSEYQPKYNSARAVYRELKKYVDEIDWNMLAVPPTDSCKDQMQWVAWKRLLAFEKGN
PQRIDSASNKRIIFSYEQCLMYLYHYPDIWYDYATWQAKSGSMDAAVKVFQRALKALPES
EMLKYAYAELEESRGALQSAKKLYESLLGDAAETTALAHIQFIRFLRRNEGVEAARKYFL
DARKSPSCTYHVYVAYALMAFCLDKDPKVAHNVFEAGLKQFMHEPVYILEYADFLSCLND
DRNIRALFERALSSLPQEESIEIWKRFTQFEKTYGDLASMLKVEQRRKEALSGTIEEGAS
ALETSLLDLISRYSFKDLWPCSSKDLDHLSRQEWLSKNIGKKVDKSALSNGSAMTDKSTS
APSGVPTASLKVLRPDTSQMVIYDPRQHHGTTVPSNTTTAILAAPNLSNPMATVVGAASN
PLSNPIVSMVDGVSSKAFDEVLKATPPALSAFLAGLPSIEGPAPNVDIVLSICLQNDYPT
VQTKKATSLPSQRTAGPAPSTSDLSGSSKSHPIPSNSSFRPRDRQLGKRKDQDRQEEEES
TTVQSQPLQRDAFRIRQMQKARGGSASQTGSVSYGSALSGDLSGSTC
NT seq
2304 nt
NT seq
+upstream
nt +downstream
nt
atggctgccgttgataagtacaacgtcgagtctgctgaaattctagccaacagtgccttg
catttgccaattacacaggcggcaccaatttatgagcaactcttgaccatctttcccact
gctgcaaaatattggaggcaatatgtggaagcacagatgggagtaaataacgacgatgct
accaaacagatctttagtcgttgtttgttgaattgtcttcatgttcctctctggcgctgc
tatattcgattcatcaggaaggtcaatgacaggaaaggtgtagagggtcaggaagagact
agaaaggcttttgattttatgcttagctatgttggagctgacatagcatctggacccata
tggatggagtacattgcttttttaaaatcaatgccggctgtcaacactcaggaagagaca
cagcgaatgactgcggtgcgaaaagcttaccagaaagctattgttactccgacacatcac
attgaacagctatggagggattatgagaatttcgaaaattctgttagccgccagctggcc
aaaggacttctctctgagtatcaaccaaaatataacagtgcaagggctgtatacagggaa
ctgaagaaatatgtcgatgaaattgattggaatatgcttgcagtaccacctaccgactcc
tgcaaggatcagatgcaatgggttgcatggaagaggcttttagcttttgagaaaggaaat
ccacaaaggatagacagtgcctccaataagcgaattatattctcgtatgaacagtgtctg
atgtatttataccactatcctgatatatggtatgactatgctacatggcaagctaaaagt
ggctccatggatgctgcagtcaaggtatttcagcgagccttgaaggctcttcctgagtca
gaaatgctgaagtatgcatatgcagaactagaggaatcccgtggagcgcttcaatctgct
aagaaactatatgaaagccttttgggggatgctgctgagaccacagcgctggcacatata
caatttattcgctttctaagaaggaatgaaggtgttgaagcagctcgcaagtatttctta
gatgctcgcaaatcacctagttgcacgtaccatgtttatgttgcttatgcattgatggcc
ttttgtcttgacaaggacccaaaggttgctcacaatgtttttgaagcagggttgaaacaa
tttatgcacgagcctgtatatattctagaatatgcagattttttgtcttgtttgaatgat
gacagaaacatccgggcattatttgagcgagccttaagctcactaccacaagaagaatct
attgagatctggaaacgattcacccagttcgagaaaacttatggcgatctagctagcatg
ttgaaggttgaacaaaggcggaaagaagctctttctggaacaattgaagagggtgcttct
gcactggagacttctctactagatcttatatcacgctacagtttcaaggatctctggccc
tgttcctccaaggatcttgatcacttgtccagacaagagtggctctctaaaaacattggt
aagaaggtggataagtcagctctctctaatggatctgcaatgacagataagagtacatca
gcaccatcaggtgttccgactgcttctcttaaagtccttcgtccagatacatctcagatg
gtgatttatgatccaaggcagcatcatggaactacagttccatcaaacaccactactgca
attcttgctgctcccaatttgtcgaatcccatggctacagttgttggtgctgcttcaaac
ccattgtccaatcccatagtctcaatggtagacggtgtatcctccaaggcatttgatgaa
gtactgaaagcaacaccacctgctttgtcagcatttttggctggcttgccttctatcgag
ggtccggcaccaaatgtagacatcgtattgtctatttgtttgcagaatgactatccaact
gtccagacaaaaaaagcaacgagccttccatctcaaaggactgcaggtcctgctcctagc
acaagtgatctttctgggtcaagcaagtcccatcccattcccagtaattcatctttcagg
ccacgggacagacagctcggcaaaagaaaggatcaagacaggcaagaagaggaggaaagt
acaacagtacaaagccagccactacaaagagatgcattcagaataagacaaatgcagaaa
gcaagagggggttcagcttcacaaacaggatcagtttcttatggaagtgctctttctggg
gatctctctggcagtacttgttaa
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