Gossypium raimondii: 105784983
Help
Entry
105784983 CDS
T04129
Name
(RefSeq) uncharacterized protein LOC105784983 isoform X1
KO
K12875
apoptotic chromatin condensation inducer in the nucleus
Organism
gra
Gossypium raimondii
Pathway
gra03013
Nucleocytoplasmic transport
gra03015
mRNA surveillance pathway
gra03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
gra00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
105784983
09122 Translation
03013 Nucleocytoplasmic transport
105784983
03015 mRNA surveillance pathway
105784983
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gra03019
]
105784983
03041 Spliceosome [BR:
gra03041
]
105784983
Messenger RNA biogenesis [BR:
gra03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
105784983
Spliceosome [BR:
gra03041
]
Complex C
Other components
EJC/TREX
105784983
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RSB_motif
SAP
Motif
Other DBs
NCBI-GeneID:
105784983
NCBI-ProteinID:
XP_052481198
LinkDB
All DBs
Position
2:5839363..5843660
Genome browser
AA seq
718 aa
AA seq
DB search
MSSKYQILDNRPIDQWKVTELKEELKRRKLITRGLKEELVRRLDEAVRLERENAETEEDN
GFNSDPQPTDEGGIEKAMPVIAETVKDDVDHSGSRIKESGVKVHVDINESAAALGHEGVQ
GSDSLVEKELVSETTTIQTEITVTKNVVCEVPSTEKESSGQNENVNTDIEVESEDSKLQS
DPKPRLENVGPKPEVKNEGSKPEVESEGLKAEGENDDPKGQLQCVGSKPQLDLEESKVQL
EIEGLKAPHKDDVRDSSAPNIQVSEVSPDLGFQVKSDSISTDSVSNNEKIELKDNILADN
VKLDLDVVKPEMVEPSSSNVVPFSGESHPMDVEDPPENKAPVDERDDKNVTNVDISNKND
SAEMAFSEKLNLDRSSGDDSMEEDVLESKQIDSKCSTDEMGDKSEKNRAPIVKEKSPVGV
FRDDLSIDKKDTLVENKSRSFVPAEKRKLHDQEPVGNNELSKRRKWNSDNIKVPEHQGNL
APTTTPKDTPQPAALRRNFSRSDSTASEGTPKERVVPPSQNAPTNSLRIDHFLRPFTLKA
VQELLGKTGTVTSFWMDHIKTHCYVTYSSVEEAIETRNAVYNLQWPPNGGRLLVADFVDP
QKVKTRLDAPPQTPTTPGTSGSTAPQAQPASQPQPSPRQQVSRQQHPPPSALPPPPLSNP
PPVRERLPLPPPPAEKVDPPIVTLDDLFWKTKAIPRIYYLPLSDEQVAAKQAAHGRNI
NT seq
2157 nt
NT seq
+upstream
nt +downstream
nt
atgtcatcaaaatatcaaatacttgacaatagaccaattgatcaatggaaggttacagag
ttgaaagaagaacttaagaggcggaaactgataactcggggcttgaaagaggagttggta
agacgtttggatgaggccgttagattggaaagggaaaatgctgaaactgaggaagataac
ggttttaattctgatccccagcctacagatgagggagggattgaaaaggcaatgccagtt
attgctgagacagttaaagatgatgtggatcatagtggcagtaggatcaaggagagtggg
gtgaaagttcatgttgacattaatgagagtgcagctgctttgggtcatgaaggagttcaa
ggaagcgacagcttggtggaaaaggagcttgtttctgaaaccaccactattcagactgag
ataacggttaccaagaatgtggtatgtgaggtaccatctactgagaaagagagctcagga
caaaatgagaatgtgaatactgatatcgaagtggagagtgaggattctaagctccagtct
gatcccaagcccaggttggagaatgtgggtccaaagcctgaggtgaagaatgagggttca
aagcccgaggtggagagtgagggtctaaaggctgagggggagaatgatgatccaaagggc
cagctgcagtgtgtgggttcaaagcctcagctggaccttgaagagtcgaaggtgcagctg
gagatcgagggtttgaaggctccccacaaagatgacgtgcgtgattcgtctgctccaaac
atccaggtatctgaggtcagccctgatttagggtttcaagtaaaatctgattctatttct
actgattctgtctcaaataatgaaaagattgaattaaaggataatatacttgctgataat
gtcaaattagacctagatgttgtaaagccagagatggtggaaccatcatccagcaatgtt
gtcccatttagtggtgaatcacatccaatggatgttgaagatccgcctgagaacaaggca
cctgttgatgagagagatgacaagaatgttacaaatgtagacatcagtaataaaaatgac
agtgctgagatggcgttctcagaaaaattaaatttggatagaagttctggtgatgactct
atggaggaggatgtgcttgagagtaaacaaattgattcaaaatgtagtactgatgaaatg
ggagataagagtgagaagaatagagcacctattgtcaaggagaaaagtcctgttggtgtt
tttagagatgatttatctatagataaaaaggacaccttggttgagaataagagccggtct
tttgttcctgctgagaaaagaaagcttcatgatcaggaacctgttgggaataatgagctt
tctaaacggcgcaaatggaattctgacaatataaaagttccagaacatcaaggcaatctt
gcgcccaccacaacacctaaagacacccctcagcctgctgctttgagacgtaacttctct
agatcagactcaacggcaagtgaaggtacaccaaaggaacgagttgttcccccttcacaa
aatgctccaaccaattccctcagaattgatcattttcttcgcccttttaccttgaaagct
gtacaagaacttctagggaaaactgggactgtaacaagcttctggatggaccatattaag
acccattgctatgttacatattcatctgtagaagaagcaatagagacaagaaatgctgtt
tacaaccttcaatggccacctaatggtggacgcctattggtggctgactttgttgatccc
cagaaagttaaaacccggcttgatgctccaccacagactccaactactcctgggacttct
ggttctactgctcctcaagctcaacctgcttctcagccccagccctctccacgtcagcag
gtttctagacagcagcatccaccaccttctgcacttcctccaccgcctttgtctaaccct
ccaccagttagagaacggctccctcttcctccgccaccggcagagaaagtagatcctcct
attgtcactctggatgatctattttggaaaaccaaagcaattcctcgtatctactatttg
cctttgtcagatgaacaagttgcagcaaagcaagcagcacatggcagaaacatctag
DBGET
integrated database retrieval system
