Gossypium raimondii: 105785305
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Entry
105785305 CDS
T04129
Name
(RefSeq) endoribonuclease Dicer homolog 2 isoform X1
KO
K11592
endoribonuclease Dicer [EC:3.1.26.-]
Organism
gra
Gossypium raimondii
Brite
KEGG Orthology (KO) [BR:
gra00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
gra03036
]
105785305
Chromosome and associated proteins [BR:
gra03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
105785305
microRNA pathway
RISC loading complex
105785305
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ribonuclease_3
Ribonucleas_3_3
Dicer_dimer
ResIII
Helicase_C
DEAD
PAZ
dsrm
Cas3-like_C_2
SWI2_SNF2
SNF2-rel_dom
Helicase_C_2
Motif
Other DBs
NCBI-GeneID:
105785305
NCBI-ProteinID:
XP_012466794
UniProt:
A0A0D2NN15
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All DBs
Position
1:complement(19291875..19302716)
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AA seq
1393 aa
AA seq
DB search
MEPVGMEMNNSQQHSSDPLPFARSYQLEALEKAIKQNTIAYLETGSGKTLIAIMLLRRYA
YLIRKPSPFNAVFLVPQVVLVEQQADAVEMHTDLNVGKYWGDMEVDFWDDAKWKQEIDKY
EVLVMTPQILLNGLRHGFFKINMIKVLIIDECHHARGKHPYASIMTEFYHRQLEAGVSDL
PRIFGMTASPINTKGANSADSYWQKIHELETIMNSKVYTCVSESVLAQFVPFSTPKFKFY
QDMEIPYVLYARLVQELNVLKVKHECSLDNLDLEASAAESTRRKISKIHSALIHCLDELG
VWLALKAAEYLSCYESEFLMWGKLDVFGDKIVRSYSVDAFHAIETCIPSDPDWTIVNDVK
ASVDAGFLTTKVLCLIESLSEYRVLRDIRCIIFVERIITAVVLQSLFSELLPRYGNWKTK
YIAGNNSGLQNQTRKKQNEIVEEFRKGMVNIIVATSILEEGLDVQACNLIIRFDPSPTVC
SFIQSRGRARMQNSDYLLMVKSGDFSTHSRLKNYLTSGDVMRKESLCHASDPCSPLSNDL
CDEEFYHVASTGAFMTLSSSVGLIYFYCSRLPADGYFKCTPRCIIDKQMGVCTLHLPKSS
PIRTVCVKGNFKSLKQKACFEACKQLHQIGALTDNLVPDIVVEENDAEEIGKESYNDDQP
IFFPPELVNQDSQESMTKYYCYLMELKQNFGYEFPVQNIILLVRSQLEMEAKSVGIELEV
DRGTLTVNLKYIGLIRLSSDQVILCRRFQIALFRVLMDHKAEKLTELSDLTSGNNSEIDY
LLLPSNYMGQNPVIDWLSISSILFSYEKVWKNHVNCNAGMIQTKSGLVCTCMIKNSLVST
PHNGRTYIIDGLLNNINANSLLTLSDGGVMTYKEYYEQRHGIHLCFSRVSFLAGRHIFPV
QKHIQRCKKQKEKESSNAFVELPPELCDVIMSPISISTFYSFTFLPSIMHRLESLLLATI
LKKMLLDHCVHDVAIPTMKVLEAITTKKCLESFHLESLETLGDSFLKYAVCQQLFKKHQN
HHEGLLSIRKDKMISNTTLCMLGCDKKLPGFIRDEPFDPKGWMVPGYNCGRHTLNEEKLN
TRKIYVSGRRKLKSKKVADVVEALIGAYLSTGGEVAALLFMNWIGITIDFRNIPYERHFE
VQAEKIVNVQHLESLLNYSFQDPSLLVEALTHGSYMLAEIPGCYQRLEFLGDSVLDYLIT
RHLYNKYPGISPGLLTDLRSASVNNNCYALSAVKAGLHKHILQSSQKLYKHIKETVESFQ
ELSLDCTFGWESEKSFPKVLGDVMESIAGAIFVDSGYNKETVFRSIRPLLEPLITLETMT
VHPVKELNELCQKKHYEQRKPIVSHGNGVSSVTIEVEANGEVLKHTSTACDKKMAKKLAS
KEILKSLKLANFC
NT seq
4182 nt
NT seq
+upstream
nt +downstream
nt
atggagccagttggcatggagatgaacaattcccaacaacactcttctgatcctctccca
tttgccagaagctatcagcttgaagcactagagaaagctatcaagcaaaacacaatagct
tacttggaaactggctctggcaagacactgattgccatcatgcttctccgcagatatgcc
taccttattcggaagccttcaccttttaatgctgtcttcttggttccccaagttgtcctg
gttgaacaacaagctgatgctgtggaaatgcatacggacttgaatgtgggaaagtattgg
ggagatatggaggttgacttttgggatgatgcgaaatggaagcaagaaattgataaatat
gaggtgcttgtgatgacacctcaaattttactcaatggattgaggcatggcttcttcaag
ataaacatgattaaggttttgataattgatgaatgccatcatgcccgaggaaagcaccct
tatgcttccattatgacagaattctatcatcggcaattagaagctggtgtatctgatctt
cctaggattttcgggatgactgcttcccctataaacacaaaaggggcaaactcggctgat
agctattggcagaagatccatgaactagagacgattatgaattcaaaggtgtatacatgt
gtaagcgaatcagtgcttgctcagttcgttccattttcgactccaaagttcaagttttac
caagacatggaaattccatatgttttatatgcacgcttggtacaggaattgaatgttttg
aaagtaaagcatgaatgttcgttggacaatttggatcttgaagcttctgcagcagaatct
acgagacggaaaatatcgaagatacattcagctttaatacattgtttagatgagcttggt
gtctggttggctttaaaggctgcagagtacttgtcatgttatgaaagtgagtttcttatg
tgggggaaattggatgtctttggtgacaaaattgttaggagttacagtgtggatgctttc
catgccattgaaacatgcataccatctgatccagattggaccatcgttaatgatgttaaa
gccagtgtggatgctgggtttcttaccacaaaagttttatgccttattgaatctctttct
gaatacagggtgttgagagacataaggtgtataatttttgtggagagaattataacagca
gttgtgcttcaatcactattcagtgaattgcttccgaggtacggtaactggaagactaaa
tacattgcaggaaataactctggattgcagaaccagactaggaaaaaacaaaatgaaatt
gtagaagaattccgaaaaggcatggtaaacataattgttgcaacttcgattcttgaggaa
ggcttggatgttcaagcatgcaacttaattatcagatttgatccttcaccaacagtttgt
agttttatacagtctcgaggacgtgctagaatgcagaattcggattatctattaatggtg
aagagtggggatttttctacacattctcgactgaagaactatcttactagtggagatgta
atgagaaaggaatctttgtgccatgcatctgatccttgttctcctctaagcaatgactta
tgtgatgaagagttctaccatgttgcaagtacaggggcatttatgactcttagttctagt
gttggtttgatatacttctattgctcacgcctccctgcagacgggtattttaaatgtact
ccgaggtgtatcatagacaagcaaatgggggtttgcaccctccatctacccaagagttcc
cctatacgaactgtttgtgttaagggtaactttaaaagcctaaagcagaaggcatgcttt
gaagcatgcaagcaactccatcaaattggtgctttgacagataatcttgtgcctgatatt
gttgtggaagaaaatgatgctgaagaaattggaaaggaatcctataatgatgatcaaccg
attttttttccacctgaactggtgaatcaagattcacaggagtccatgacaaaatactac
tgctacttaatggagttgaagcagaactttggttatgagtttcctgttcaaaacatcata
ctccttgtcaggagtcagcttgaaatggaagcaaaaagtgtgggtattgagttagaagtt
gataggggcactctgacagttaacttgaaatatattggactgatacgtcttagttctgac
caggttatcttgtgtagaaggtttcagattgctctttttcgagttcttatggatcataaa
gcagaaaagttgacagagttatctgaccttacgtcagggaacaattctgaaatcgattat
cttcttctcccatcaaattacatgggccaaaatcccgtgattgattggttgtcaatttct
tccatcttattttcttatgagaaggtctggaagaatcatgtgaactgcaatgctggcatg
atacagaccaaaagtggtctggtgtgcacttgcatgataaaaaattcgttggtctctact
cctcataatggtcgcacatatattattgacggtcttttaaataatataaatgcaaattca
cttttgacactgagtgatggaggagtaatgacctacaaggaatattatgaacagcgacat
ggtatccatttatgttttagtcgagtctctttccttgctgggcgacacattttccccgtg
caaaagcacattcaaaggtgcaaaaaacagaaagagaaagaatccagtaacgcatttgta
gaattgcctcctgagctttgtgatgtaataatgtctcccatatcgattagcacattttat
tctttcacatttcttccatcaatcatgcatcgactcgaatctttactccttgctaccatc
ttgaaaaagatgcttctcgatcattgtgtgcatgatgttgctattccaaccatgaaggtt
ttggaggcaattaccacaaaaaagtgcctggaaagttttcatttagaatcactggagact
cttggtgattcttttttgaagtatgctgtttgtcaacagctattcaaaaaacatcagaat
catcatgagggccttcttagtattaggaaggacaaaatgatttcaaatacaaccctttgc
atgctgggatgtgacaagaaacttccgggatttatccgtgatgagcctttcgatcccaaa
ggttggatggttcctggttataattgtggaagacatacattaaatgaggagaaattaaat
acaagaaaaatatacgttagtgggagaaggaagctgaagagtaagaaggttgctgatgtt
gttgaggctcttattggtgcataccttagcacgggaggtgaagtagctgcattattattt
atgaattggattggtataactattgattttagaaatataccatacgaaagacatttcgaa
gtgcaggctgaaaagattgttaatgtccaacatttagagtctcttcttaactattcattc
caggacccttctttgttagtggaagcactaacacatggttcttacatgcttgctgaaatt
ccaggatgttatcagcggctggaatttctaggggactccgttttagattatcttatcact
cggcatttatataataaatatcctgggatctcaccaggattattaacggatctgaggtca
gcatctgttaacaacaattgctatgcattatcagctgtcaaggctggattgcataagcac
attctccaaagttcacagaagctttacaagcatataaaagaaactgttgaaagttttcag
gaattatcgttggattgcactttcggttgggaatctgaaaaatctttccccaaggtactg
ggtgatgtgatggagtcaattgctggggctatatttgttgattcaggatacaacaaggaa
actgtattccggagtatcaggccactgttggagcccctgattactctagagactatgacg
gttcaccccgtgaaggagttgaatgaactctgtcaaaagaagcattatgaacaaagaaaa
cccattgtttcacatggcaatggggtttcttctgttaccatagaggttgaagcaaatggc
gaggtattaaagcacacatcaacagcttgtgataagaagatggccaagaaactggcttcc
aaagaaattttgaagtccctaaagctagccaatttttgctag
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