Gossypium raimondii: 105785338
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Entry
105785338 CDS
T04129
Name
(RefSeq) uncharacterized protein At3g06530 isoform X1
KO
K14550
U3 small nucleolar RNA-associated protein 10
Organism
gra
Gossypium raimondii
Pathway
gra03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
gra00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
105785338
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
gra03009
]
105785338
Ribosome biogenesis [BR:
gra03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
105785338
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ARM_At3g06530
HEAT_HEATR1
BP28CT
U3snoRNP10
TOR1L1_N
Tti2
Motif
Other DBs
NCBI-GeneID:
105785338
NCBI-ProteinID:
XP_012466889
UniProt:
A0A0D2LQF8
LinkDB
All DBs
Position
7:48672671..48688620
Genome browser
AA seq
2171 aa
AA seq
DB search
MASSIASQLQAIKTFIQVENEPQKRPLTRPSILFNPKEAADIDIDTILDIALSGLEILVG
VDERFRNCKNDLFNLKSKELDRELMGVDENNQINASISSYLRLLSGHLQLPASLKTLEYL
IRRYKIHVYNVEDLVLCVLPYHDTHAFVRIVQLINTGNSKWKFLDGVKASGAPPPRSVIV
QQCIRDMGVLEALCNYASPTKKFQASRPVVSFCTAVIVEVLGCVATIDSDIVKRIHPFVA
SGLQFGVKGGSDHKAGALMIVGLLANKVALAPKLVNSLIRTVAEVAREDVKESTDLQWFR
LALMALINLVQSQSVDVFPKKALEALRDIKDIGAVLLELSKEFNIDRFLAILLEALVDQS
SSDDSYHLALISVIDSVPLRNLVDPIVSKILLTCMKLSERDGKLVSSESVTWAKNVLATI
KKNYPSQFHGAVHKFLEDAKVQSKKEDTVCEFLSKILDGNLDLSIAFSESKIWFASHHPK
PEVRRATFSGLNRSAIVKMKSLDAQRLVAVKDAVLRQLHDDDLTVVQAALSVDGLTEVVS
PLDLLEALRDVLKKCLSFLTLGSSVNSTLSCDVAVSFLKIAMLSFHDQIDYLKEVASMIF
SLLLILPETHRLSLKVLDLAKTIKWPFFQTLAAASGEEVLQKLLSGSSVDVEAVGRFEKK
MQKRGTVSTVNMEIVRFLSEEFLMQPTEYMPWLTRSCDNFKSSKTLLFLVLMQSFSMSID
DGKFLVLFDACFPVLKSQWEAFGSTLGNSLHEFNEEMLDWDCKKFLDQLFVADVDTVNKN
ILICLFWRLLDSAVNAEFFLDDNENGITRVQDFFIFVAGSSLKDAFKKHLQELVEKHLHD
FLTKCKVSPVRFLSRFYTAEEVPAAVQVESLHCFSFLCSQLNDRLPFELLAEFPSLLLPL
TSDSQATRIAAMDCFEKLYKLWCQVDFSSKKNGNTAIWSHFLDELLGLMVQQKRLILSDK
NFLPSFLTCLLGSSCESILVSPNIEQRFTKSTKEKILAFILSSALNLSESGKLKVLSLLK
GLGNAILHVKEIEALLSLLLRKRSQCYFDLENSSLKLSEAEIMILCLLLEMCILPSSLGG
QFSEHVFKALQLDSKSPEDPAIKEPCITVLQKLNSQFYSGLTNETQGQMFRQLVLLFHNS
NSDIHSATRDALLRLTIASSTVGEMLDLVFKEDPVAIVSADGKKKKKSAANPKPGYDLVF
KGEQTLYFLSSLLDVLLLKKDISNRQFLVGPLFKLIRKAFSDEWVHRVLAQDGSWIQTSG
VPQSKSTVIVYVQKTLLLILDDIFASFMDGSSPLKDGIMDKIDVKLLVDCARLTTDGVTR
NHVFTLLSTISKLVPNRILEHILDILMVIGESAVSQIDSHSQHVFEDLISAVVPCWLSKT
NNTENLLRVFVNILPEIADHRRLSIVAFLLRILGEIDSLASLFVLLFRSLVSRKGLSCLT
DTFASDSFLYSAHQDWEYAFAIQICGQYSCRVWLPSLLKVLQVMRPNDLTQEVFMQFFFA
MHFVLYKLQDPEFALKLESRENSDSIQRKLGELVEQVVFLSQVVDARRKQIGIPVGSWKE
FKACVHAILKTITMSMMPSTCFECITKLLGNADNTVRKKALEILCETLKDHVSVKSKRKE
KRDLDPNSNSYELHLDDTALEYFQKMCAEIVQIVDDSIDESNVSLKLAALSTLDILAQRF
SSNHSVFGMCLASVMKGISSDNMAVSSSCLKTTGTLVNVLGPKALAELPCMMENVIRKSR
GISVSSNLESRSDESTSILLSILITLEAVVEKLGGFLNPYLGDIIELMVLHPAYVSASDL
KLKTRADLVRKLLTDKIPVRLTFQPLLKIYLGAVKSGDSSLVIAFQMLADLVSKMDRTSV
SGFYGKIFDQCMVALDLRRQHPVTVQTIDAVEKSVINAIVSLTMKLTENMFKPLFAKSIE
WAETEFQDVAGSGTMNIDRAISFYSLVNKLVENHRSLFVPYFKYLVKSCVQLLSDSADKA
SDLVRKKKKAKVQEDGNIVNGGVSLKSWHLRALILSSLHKCFLHDTGRQKFLDSSNFQVL
LKPIVSQLVIEPPTSVEEQIDVPSLKEVDDLLVVCIGQMAVTAGTDLLWKPLNHEVLMQT
RSEKMRARVLGLRIVREFLEKLKEEYLVLLPETIPFLGELLEDVELPVKSLAQDILKEME
TMSGENLREYL
NT seq
6516 nt
NT seq
+upstream
nt +downstream
nt
atggcgagttctatagcttctcagctacaggctatcaaaacgtttattcaagttgagaat
gaacctcaaaagcgtcctttaactcgcccttccattttgtttaaccccaaagaagctgct
gatattgatattgatactattctggacattgcactgtcagggctagagattctagtaggc
gtggacgaaaggtttagaaactgcaagaatgatttgttcaatctcaagagtaaagaattg
gatagagaattgatgggagtagatgaaaataatcaaattaatgcctcgataagttcgtat
ttgcggttactatcaggacatcttcaacttcctgcctctcttaaaacacttgagtacttg
atacgtcgatacaagattcatgtttacaatgttgaggatttggttttatgtgtgcttcca
taccatgacacgcatgcatttgttcgaatagttcagttaatcaacacagggaatagtaaa
tggaaatttttggatggtgttaaagcctctggtgcaccgcctcctaggtctgttatagtg
caacaatgtattcgagatatgggagttttggaggccttgtgcaactatgcatctccgaca
aagaaatttcaggcatcaagaccagtggttagcttttgcactgcagttattgttgaagtt
ttgggttgtgttgcaacaattgacagtgacattgtgaagagaatccatccgtttgtagct
tctggtcttcaatttggtgtaaaaggaggttctgatcacaaggccggtgctttgatgatt
gttggattactagcaaataaagtggcattggctcctaaacttgtaaatagtttgattcga
acagttgctgaggttgctagggaagatgtaaaagagtcaactgatttgcaatggtttcgg
ttggcccttatggctttgataaatcttgttcagtcacagtctgttgatgtattcccaaag
aaggctttggaagctttgagggatatcaaggatattggtgctgttcttctggaactatcc
aaggaatttaacatcgatagattccttgccatactgttggaagctctggttgatcaaagt
tcttctgatgactcatatcatcttgctttaatatcagtaatagattcagttcctctgagg
aatttagtggatcctattgtctcgaagattctactaacctgcatgaaattatctgagagg
gatggcaaattggtatcttctgaatcagtaacctgggccaagaatgttttagctactatt
aagaagaattatccatcacaatttcatggagctgttcacaagttcctagaggatgccaaa
gtacaatccaagaaagaagacactgtatgtgagttcttgagtaaaatattggacgggaat
ttagatttatcaatagccttctcagagtccaaaatctggtttgcatcacaccatcctaag
cccgaggttcgacgtgctacattttcagggcttaaccgatctgctattgttaaaatgaag
tctcttgatgcacagaggcttgtagccgttaaagatgctgtattgcgccagcttcatgat
gatgatttaacagtagttcaagctgctctgtctgtggatggattgactgaagtagttagt
cctttggatcttcttgaagcattacgtgatgtgcttaagaaatgtctaagttttctgaca
ttaggttcgtcagttaactctactttgtcttgtgatgttgctgtttcattcctaaagatt
gccatgctcagcttccatgatcagatagattatttgaaagaagttgcttccatgatattc
tcactactactaattttgccagagactcataggttgagcttgaaggttttggatttggcc
aagacaataaaatggccatttttccagacacttgcagctgcatctggggaggaagtgttg
cagaaattactgtcaggatcctctgttgatgtggaggctgttggcagatttgagaagaaa
atgcagaagcgtggcactgtatctacagttaatatggaaattgttagatttctatcggaa
gagttcttgatgcaacctactgagtatatgccttggcttaccagaagttgcgacaacttt
aaatcatcaaagacccttctctttttggttctgatgcagtcattttctatgtcgatagac
gatggaaaatttttggtactttttgatgcttgctttccggttctgaagtctcagtgggaa
gcttttgggtctacacttggcaactctctacatgagttcaatgaagagatgcttgattgg
gattgcaaaaagtttctagatcagctttttgttgctgatgttgatacagtaaataagaat
attcttatatgcctattctggaggttacttgattcagcagtcaatgctgaattctttctg
gatgacaatgagaatggtattacccgagttcaggattttttcatctttgtagccggttct
agtttgaaggatgcattcaagaaacaccttcaagagcttgttgagaagcatctacatgac
ttccttacaaagtgcaaagtttcacctgttcgatttctgtctaggttttatacagcagaa
gaagttcctgctgcagttcaagtagagagccttcattgtttctcatttctttgttctcag
ctaaatgatagactaccatttgaacttttggctgaatttccctcgcttcttcttccactc
accagtgacagtcaggctactaggattgctgccatggactgttttgaaaagctatataaa
ttgtggtgtcaagtggacttctccagcaagaaaaatggaaatactgcaatttggagccat
tttcttgatgaacttttgggcttgatggttcagcaaaagaggcttatattatctgacaag
aatttcctcccttctttcttgacatgtttgcttggctcgtcttgtgagagcattttggtt
tctccaaacattgagcaaagatttactaaatctacaaaggagaaaattctggctttcata
ttaagttctgctctaaatctctctgaatctggaaagctaaaggttttatctttgctcaaa
ggattagggaatgctattctgcatgttaaagagattgaggcattattatctctgcttctg
agaaaacgaagtcaatgctattttgacctggaaaactcatccctcaaattgtcagaagct
gaaattatgatcctgtgcttgcttttggagatgtgtattttgccctcgtctcttggtgga
cagttttctgaacatgtgttcaaggcattgcaattggattctaagtctccagaagaccct
gccattaaagaaccctgtattactgttttacaaaagctgaacagtcaattctacagtggc
ttgacaaatgagacacagggtcaaatgtttcgacagctagtgcttttgtttcacaacagt
aatagtgatattcatagtgcaaccagagatgcattgctgcgtttaactattgcttcgtct
acagtaggtgagatgcttgatcttgtatttaaggaggatccagtcgcaattgtttcagct
gatggaaagaagaaaaagaaatcagctgctaatccaaagcctggttatgatttagttttt
aaaggagaacagactctctattttcttagctcccttcttgatgtgttgcttctgaagaaa
gacatatcaaacaggcagttccttgtcggtcccttatttaagcttatcaggaaagcattc
tccgatgaatgggtacatcgtgttctcgctcaagatggaagttggatacaaacttctggt
gttcctcagtcgaagtctactgtaattgtttatgtacagaaaacattattgttaattctg
gatgatatttttgcttcattcatggatggaagtagtcccctgaaggatggcataatggat
aaaattgacgtcaaactgctggttgattgtgctcgtttgacgacggatggagtaacccgc
aatcatgtctttaccctgttatccactatttcaaagttagttcctaataggatattggag
cacatactggatatacttatggttattggagaatctgcagtctcacagattgatagccat
tctcaacatgtgtttgaagatcttatatctgctgttgttccatgctggctatctaagacc
aacaatacagaaaacttgcttcgggttttcgtaaacatattgcctgaaattgctgaccat
agaaggctgtcgattgttgcattcttattgaggattttgggggagattgatagtttggct
tcattgtttgtcctccttttccgttcattagtttcaagaaaaggactatcttgccttaca
gatacattcgcttcagatagtttcttgtattctgcacaccaagactgggagtatgccttt
gccatacaaatatgtgggcagtactcgtgccgggtttggcttccttctctattaaaggtt
cttcaagtaatgagaccgaatgatctcactcaagaagtgtttatgcaattcttctttgcc
atgcattttgttttatacaaattgcaagacccagaatttgcattgaagcttgaatctagg
gagaactcagatagcatccagagaaaacttggagaacttgtagagcaggtcgtctttctc
tcacaagttgttgatgcaagaagaaagcaaataggaattccagttggaagttggaaagag
tttaaggcatgtgtgcatgctatattgaagacaattacaatgagtatgatgccttccaca
tgctttgaatgcatcaccaaattacttggcaatgcggataacactgtgagaaagaaggct
ctcgagatattatgtgaaacacttaaggaccatgtctctgttaagtcaaagcgcaaggaa
aaaagagatctggatccaaattcaaatagctatgagctccatttggatgatactgctctt
gaatattttcagaagatgtgtgcagaaattgttcagatagttgatgattctattgatgaa
tcaaatgtgtcattgaaactggctgcactttcaacactggatatcctggcacagaggttt
tcttctaatcattcagtctttggcatgtgccttgcatcagttatgaaaggcatcagttca
gacaacatggctgtctcttccagctgccttaaaacaactggcacattggttaatgtcctt
ggaccaaaggctctggctgagcttccttgtatgatggaaaatgttattaggaagtctcgt
ggaatatctgtgagttccaatttagaaagcagaagtgatgaatctacttccattttgctg
tctattcttataactttggaagcagttgttgagaagcttgggggatttttaaacccatat
cttggagatatcatagaactaatggtacttcatcctgcatatgtgtcagcttcagatcta
aagctgaaaaccagagctgatttagtgcgaaagctcttgactgataagatacctgttcga
cttacttttcagcctttgctaaagatatacttgggtgctgttaaatctggggattcaagc
ttggtgattgctttccaaatgttagcagatctagttagtaaaatggataggacatcagtt
agtggtttctatggaaagatttttgaccaatgcatggttgctcttgatttgcgtcggcaa
caccctgttacagttcaaactattgatgctgtagaaaaaagcgtcatcaatgcgatagtt
tctcttacaatgaaactaacagagaatatgtttaaacctctttttgccaagagtattgag
tgggccgagacagagtttcaagatgttgctggtagtggaaccatgaatattgacagggct
atatcattctatagcctggttaataaacttgtggagaatcataggtctttatttgtcccc
tacttcaagtacttggtcaagagttgtgtacagctgcttagtgattctgcagataaagct
tctgatttagtacggaagaaaaagaaagccaaggttcaggaggatgggaatattgtaaat
ggcggcgtatcacttaaaagttggcatcttagggcattgatcttatcatcactacacaaa
tgttttctccatgacactggaaggcagaagtttctcgattcatcaaactttcaggtttta
ttgaagcccattgtttctcagcttgtcattgagcctccaacttccgttgaagagcaaatc
gatgtaccgtctctgaaggaagtagatgacttgctggttgtttgcataggtcagatggct
gttactgctggaactgacctgctgtggaagcccctgaaccacgaggtattgatgcaaaca
cggagtgagaagatgcgtgctcgagtgttggggttgagaatagttagggaatttctggag
aaattaaaagaagaatatttggtactgctaccagaaaccatccccttcctaggtgaattg
ctggaagatgtggagttaccggtcaaatcattggcacaagatatcctcaaggagatggag
actatgagtggtgaaaaccttcgcgaatacctctga
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